RNA id: XM_039812887.1


Basic Information

Item Value
RNA id XM_039812887.1
length 748
RNA type mRNA
GC content 0.47
exon number 5
gene id rnaseh2c
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23184192 ~ 23187058 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCAGCGTAGAAGAAGACGCTTTCGTCCAATCACACGCAGCGACTGGCGCTAACCGGAAAAGGTCCAGTTTTTTAGTTTCGCATAAACGTTTGGAAGACTGCTGAAAGGATGTCTTGTAACACCAGTGTTACTCGTGTTGACGTGTCGTCTGTGGGCCAGGCACAGCGAGCTCCAGTCCACCTCCTGCCCTGTGAGATTGAACACAACGGGCCGGCCCAGGTCTCGCAGTACCTCACTGCTACCACGAAAGACTGCAAACTAGAGAAGACAGTGTCATTCAGAGGGCGTGGGTTGAAGGGACAGGAGCTCAGCTGTCCACAGGGCTACACCGGCTTGGTGCTGAAAGAGATCAACAAGCCTGGTTCTGACCAAGAGGACAGGACAGTGAAGGTATCCTCAGTGTTTGACAAGCTGACTTACTGGAACCTGGAGACGCCTCCGAATTCTGACGATACAGTTGTGATGGCGATGGATTGGCCAGAGTTGGCTGAGGCAATCCACGGGCCAGTGGAAGACTGAAGATAGGGGCCAAAACTTCTGCTCAGAGGGGGCAGGTTGGTGTCACCTCAACGTCTTAGGAAAATCAAATATTATACAGTTTGCTAGTAACTGGCTATAGCAAGTGAAAGAAATGCTAACAAGTTTAGTGTTACAATTGCAGAGTAATAAGCTACAGActtaatgtttatatttttttatgataaGTTCTTTTGtaataaattgaaataaaaagatAACTGACTGAA

Function

GO: NA

KEGG:

id description
K10745 RNASEH2C; ribonuclease H2 subunit C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144160 lncRNA downstream 2475 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 10774 23092565 ~ 23173418 (-) False trpt1
TU144063 lncRNA downstream 210432 22928854 ~ 22973760 (-) True G107220
TU144057 lncRNA downstream 307733 22875496 ~ 22876459 (-) True G107215
TU143987 lncRNA downstream 327846 22856125 ~ 22856346 (-) True G107160
TU144201 lncRNA upstream 54979 23242037 ~ 23243940 (-) True G107324
TU144202 lncRNA upstream 54979 23242037 ~ 23263899 (-) False G107324
TU144586 lncRNA upstream 604996 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 697539 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 697539 23884597 ~ 23971180 (-) False rab41
XM_039812886.1 mRNA downstream 7166 23172848 ~ 23177026 (-) False trpt1
XM_039812885.1 mRNA downstream 7166 23172848 ~ 23177026 (-) True trpt1
XM_039812866.1 mRNA downstream 28847 23051417 ~ 23155345 (-) False macrod1
XM_039812865.1 mRNA downstream 28848 23051417 ~ 23155344 (-) True macrod1
XM_039812864.1 mRNA downstream 28849 23051417 ~ 23155343 (-) False macrod1
XM_039812879.1 mRNA upstream 79856 23266914 ~ 23282656 (-) True kcnk4a
XM_039813394.1 mRNA upstream 98261 23285319 ~ 23308063 (-) False si:dkeyp-115e12.6
XM_039813395.1 mRNA upstream 98261 23285319 ~ 23308058 (-) False si:dkeyp-115e12.6
XM_039813397.1 mRNA upstream 98261 23285319 ~ 23308058 (-) False si:dkeyp-115e12.6
XM_039813393.1 mRNA upstream 98261 23285319 ~ 23308058 (-) True si:dkeyp-115e12.6
TU144153 other downstream 7192 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 18764 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 22733 23161388 ~ 23161459 (-) True trnaw-cca_11
unassigned_transcript_471 other downstream 23262 23160859 ~ 23160930 (-) True trnaw-cca_10
TU144154 other downstream 49407 23129709 ~ 23134785 (-) True G107284
unassigned_transcript_474 other upstream 186878 23373936 ~ 23374008 (-) True trnaf-gaa_66
XR_005640439.1 other upstream 699766 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 1386383 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1675054 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 2092545 25279603 ~ 25282199 (-) False G107989

Expression Profile