RNA id: TU144201


Basic Information

Item Value
RNA id TU144201
length 1788
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G107324
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23242037 ~ 23263899 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gTAACCATAACAGCCATTGGTGTTGATTAGCAGCAAAGATAGTGGTCCGTTTTTATactcaaatgttttattttttttgtattaattttGTATACTCCTTGTTTTTATATTATACAGGTCATTCATACAGTTTGATATAGTAAATAGTAATTACACACAAGAGGTGTAACAAGCATCAACCTGTCACCCTCACAGACATGCATtacacgtacacacaaacaaactcattctcacacacacacacacacacacacacacacacacacacacacacacacacacaccttactcttaaacaaaaaagataaaaatgtaaaactttttttttttaaccacaaaaCACTAAATTTTTCATCCTCCATCGTCACCAGATTCACATCCTTTcaactcttattttgaaaacgAGTATGACAATACTTAAATGTTTTaacagaataaaaaacaaataaagaaacataaaaaaatgcagGAAGGCAActaaagaagagagaaaagcaaTTCTGAAGACCGAGAAGAGTTATCCAGATCTCAGTCTTTAACTGTTGATGGAAACCGAAGCACAAATGAGCTGCAATGCAGAAGGAAGAACCACCGGCTAATATCTGGAGAACTGTCTGAGTTACAGACAACTGAAGTCTATCTTGACTTTGTGAAACTTTAAAATAATCCAATGCGCTACAGAGTTTACAGGCTTCGTGTGATCTGTTTATCTTTTTAGTCAGGAAACTTGTTCTCAGTCAGGTATGTATCCATATGAGCCAGTATACTTGACAGTAGCAGGGAGGGTGAACCAAAGCTGAACCAATGacaatgtgttgtgttgtgaagTGAGGGTGAAAACCATCTAGAGGGTGTTAGCAAAGGACACTTCATTAAAATATCTCCCTGTCTCTACTACGAGCATCACTGGACAACACATCACATAATGCACCCATAAAAGGTATACTGTTCGCAGCTAGTGATGGGTGAATTGGAATACAAAGAGAAGGAATTTCTGACATAAGTTCACCTTCTTCCTACTTCCTCTTACTTCTTCTCCATGGACCTTGGAAGAAGGTGAAATTGTGCCAGAAAGCATTACTTTAAATAAGAATACAAACAGTTTGAAGCAGCACAATTCAGAGTACATGGAGTGCCCACAATACATAAGTAAACCTTGAGTGATAATCCTATCTGCCCTTGGTTGGATTGAAAATGAACTGTTGAGAGTGACGGTGATATGTTTGCACAGACAGTAAGGAGAATCTGCAGACTAGTATCTCACTGAGGGGAGGAATATGAGGAGAGCTCTTGCCAAATGCAAACAGAATGATTAAATCTGGTTAAGTCCATGTATGATGGAGCCACATAAAACACTGGGTGTCAGTAACTGCAGTAGTCGTTAGtcgttgctttgtttttgcattgGAGCCAACACTGACTCTCATTAGTccatacacacatgcaaatacacATTCAAACCCTAGATTTTCTCCTTTAGCCGAGACTTCCACAAGTCATaattgcacacacaaacacactttctctctctcacacagacaaaaaaaagttgtcTTCATTCTTGGCCATCATCCGTGCGCCACTTCAGGAAATCCTCCTTCCGGGCGTCTGGTTTGATCTGGTTCCGCATGCCCCCGAGAAGATTGGAAGTGGCTTCAGAGGCCACTATTAAGGGTCGGACCACAGTGGGTGGGATCTGCCGCAGGACGCCGCCCACAGCGCCGGGTAGACCCTTCTGTTCGTGGCCGCGGGATGCTACATCGCACAAGGTCTGAGCTGTGTCAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144152 lncRNA downstream 17581 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 60320 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 68619 23092565 ~ 23173418 (-) False trpt1
TU144063 lncRNA downstream 268277 22928854 ~ 22973760 (-) True G107220
TU144057 lncRNA downstream 365578 22875496 ~ 22876459 (-) True G107215
TU144586 lncRNA upstream 548114 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 640657 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 640657 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 645965 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 955559 24199499 ~ 24259346 (-) True G107667
XM_039812887.1 mRNA downstream 54979 23184192 ~ 23187058 (-) True rnaseh2c
XM_039812886.1 mRNA downstream 65011 23172848 ~ 23177026 (-) False trpt1
XM_039812885.1 mRNA downstream 65011 23172848 ~ 23177026 (-) True trpt1
XM_039812866.1 mRNA downstream 86692 23051417 ~ 23155345 (-) False macrod1
XM_039812879.1 mRNA upstream 22974 23266914 ~ 23282656 (-) True kcnk4a
XM_039813394.1 mRNA upstream 41379 23285319 ~ 23308063 (-) False si:dkeyp-115e12.6
XM_039813395.1 mRNA upstream 41379 23285319 ~ 23308058 (-) False si:dkeyp-115e12.6
XM_039813397.1 mRNA upstream 41379 23285319 ~ 23308058 (-) False si:dkeyp-115e12.6
XM_039813393.1 mRNA upstream 41379 23285319 ~ 23308058 (-) True si:dkeyp-115e12.6
TU144162 other downstream 55026 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 65037 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 76609 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 80578 23161388 ~ 23161459 (-) True trnaw-cca_11
unassigned_transcript_471 other downstream 81107 23160859 ~ 23160930 (-) True trnaw-cca_10
unassigned_transcript_474 other upstream 129996 23373936 ~ 23374008 (-) True trnaf-gaa_66
XR_005640439.1 other upstream 642884 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 1329501 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1618172 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 2035663 25279603 ~ 25282199 (-) False G107989

Expression Profile