RNA id: TU144290



Basic Information


Item Value
RNA id TU144290
length 908
RNA type TUCP
GC content 0.55
exon number 2
gene id LOC120566905
representative False

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23488285 ~ 23492538 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGAGCAGGACAGGCAGGACGCTCCAGAGAGAGTAAACACTTCTTTTCAGACAAGATACTTTTATTTGTGACGCTGTGTCTGAATGGGCAGGTTTCAGAAGGTCTGATGGTGCTGGGACATCCAGAGCGACTCGGCATCTGGTGCTTTATTCGGAAACGCTGTAAAAGAGCGAGCCAAAGTTTCCTTCTGGAGGACGAGCACGGAGGAACTACCTGCCTGTCACCGGAGAGGATGAGGGAAAACCTGGGAAATGATCGTCAGGGACTCGTCTGATGTGTTTTCTTTCACCATGATGACGCCACGCGAGAGCTCCCTCCTGCGGACTCACCtgctcctccagctcctcctccctctcacaCTGTCCCTTTTGCACCCTCCTCACCCTCCGGCTGTCCACGTCCCCACGCTCATTCCTCACGCACCGATGCCTCTCATCCGCTCCCGCTTCAGCGCTCAGACACAGCTGGACTTCACCACGCACTGCAACTCCAGCTGCTTCCACAGAGGAGAGCAGGAGGCCCAGAAGGAGCAGCTCTCAGATAAACTGGCTTTTGAGACGCTGTATGCTGACGGCTCCCGCACTCTCACCACTGTAGATGTGGAGGGCGACGAGGAGTTTGAAGAAGATCACTTTGCTCACCCTTCACCGAAGAGAGGACCCAGAGTGATGCCCAGGCACAAACGCGTGAGGCGGCAGATATATGGAGCAGATGGACGTTTTAACATCCAAGGTGACAACTTCCTGTTGGATTACCCTTTCTCCACTGCCGTGCGGATCTCCACCGGCTGCACCGGCGTTCTTGTATCTCAGCAGCACGTCCTCACAGCTGCCCACTGTGTTCATGATGGGAAGGATTATGTCAAGGGGGCGCGAAAGCTCAGGGTGGGATTCCTGATTCTTCattcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU144269 lncRNA upstream 70758 23417224 ~ 23417543 (+) True G107377
TU144238 lncRNA upstream 167652 23319392 ~ 23320649 (+) True G107353
TU144221 lncRNA upstream 200623 23285363 ~ 23287678 (+) True G107340
TU144222 lncRNA upstream 203087 23282979 ~ 23285214 (+) True G107341
TU144215 lncRNA upstream 217080 23270799 ~ 23271221 (+) True G107334
TU144310 lncRNA downstream 44503 23535861 ~ 23539382 (+) True G107410
TU144426 lncRNA downstream 151934 23643292 ~ 23644515 (+) True G107507
TU144458 lncRNA downstream 195236 23686594 ~ 23688072 (+) True G107531
TU144496 lncRNA downstream 307299 23798657 ~ 23800227 (+) True G107565
XR_005640398.1 lncRNA downstream 364173 23855531 ~ 23864478 (+) False LOC120566416
XM_039812631.1 mRNA upstream 22096 23454540 ~ 23466205 (+) True ubl3b
XM_039812630.1 mRNA upstream 45023 23430886 ~ 23443278 (+) True si:zfos-80g12.1
XM_039812753.1 mRNA upstream 64600 23421174 ~ 23423701 (+) True zgc:92907
XM_039812752.1 mRNA upstream 73000 23411009 ~ 23415301 (+) True rap2c
XM_039812747.1 mRNA upstream 84876 23383678 ~ 23403425 (+) False mbnl3
XM_039814040.1 mRNA downstream 40745 23532103 ~ 23535698 (+) True fosl1a
XM_039814039.1 mRNA downstream 40748 23532106 ~ 23535698 (+) False fosl1a
XM_039813858.1 mRNA downstream 50618 23541976 ~ 23547733 (+) True fibpa
XM_039813859.1 mRNA downstream 57763 23549121 ~ 23559843 (+) True efemp2a
XM_039812543.1 mRNA downstream 88219 23579577 ~ 23585572 (+) True npas4a
TU144280 other upstream 22117 23454567 ~ 23466184 (+) False ubl3b
TU144214 other upstream 218085 23268791 ~ 23270216 (+) True G107333
TU144145 other upstream 226072 23258271 ~ 23262229 (+) False tgfb5
TU143997 other upstream 514540 22954972 ~ 22973761 (+) True G107168
TU143990 other upstream 622625 22862190 ~ 22865676 (+) True G107163
TU144281 other downstream 1486 23492844 ~ 23494989 (+) True G107386
TU144403 other downstream 98970 23590328 ~ 23626289 (+) True G107487
TU144527 other downstream 364167 23855525 ~ 23865274 (+) True LOC120566416
TU144826 other downstream 1313842 24805200 ~ 24808701 (+) True G107789
TU144828 other downstream 1350481 24841839 ~ 24843241 (+) False nox1

Expression Profile