RNA id: XR_005640439.1


Basic Information

Item Value
RNA id XR_005640439.1
length 785
RNA type transcript
GC content 0.47
exon number 8
gene id rab41
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23884588 ~ 23988901 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTTATGAAAACAATAGCGCTGGCTAGTGCAGGATAAAGATACACTACTTGCTCCTCTCCGGTCTAGACATCACATCATTAGCCAAGTCAGCTAGTTAGCTGTTTATTTTCTGAACAAAATGTCAACTACGACCGGCGGCGGAGAGTTTGGCAACCCTCTACGAAAGTTCAAGCTCGTCTTTCTGGGCGAACAGAGTGTTGGGAAGACCTCACTCATCACCAGGTTTATGTATGACAGTTTCGACAACACCTATCAGGCAACCATTGGCATTGACTTTTTGTCAAAAACCATGTACCTAGAAGATCGCACGGTCCGGCTCCAGCTTTGGGACACTGCTGGACAGGAGCGTTTTCGTAGCCTAATTCCCAGCTACATCCGTGACTCTACCATTGCCGTGGTTGTTTATGACATCACCAATCTTAATTCATTCCAGCAAACCTCAAAGTGGATTGATGATGTtagaacagagagaggaagtgatgtcattaTCATGCTTGTTGGGAACAAAACAGACTTGGCGGATAAAAGGCAAGTTTCTGTTGAGGCGGCAGAGAGGAAAGCTCGTGAGCTCAATGTGATGTACATAGAGACCAGTGCCAAGGCTGGCTATAACGTCAAACAGACAGATCACCACGGAGGAGGGTGAGCAGAGAGCTAAGGAACTGAATGTCATGTTCATTGAAACCAGCGCAAAGACTGGCTACAATGTCAAACAGCTGTTCCGtcgtgttgctgctgcattgcCTGGGATGGATAGCACACCAGAGAAAAGCAAAGAAGACA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144586 lncRNA downstream 94322 23792054 ~ 23792502 (-) True G107610
TU144202 lncRNA downstream 622925 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 642884 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 662368 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 705107 23179692 ~ 23181717 (-) True G107290
TU144657 lncRNA upstream 307198 24199499 ~ 24259346 (-) True G107667
TU144740 lncRNA upstream 395848 24288149 ~ 24381265 (-) False LOC120566461
TU144742 lncRNA upstream 395848 24288149 ~ 24330973 (-) False LOC120566461
TU144739 lncRNA upstream 403239 24295540 ~ 24303879 (-) True LOC120566461
XR_005640405.1 lncRNA upstream 406678 24298979 ~ 24381312 (-) False LOC120566461
XM_039813779.1 mRNA downstream 3367 23879061 ~ 23883457 (-) True stard14
XM_039812860.1 mRNA downstream 18068 23858022 ~ 23868756 (-) False gdpd2
XM_039812859.1 mRNA downstream 18068 23858022 ~ 23868756 (-) True gdpd2
XM_039812850.1 mRNA downstream 30533 23770291 ~ 23856291 (-) False dlg3
XM_039812858.1 mRNA downstream 30687 23770291 ~ 23856137 (-) False dlg3
XM_039813210.1 mRNA upstream 2294 23894595 ~ 23900300 (-) True arr3b
XM_039812624.1 mRNA upstream 191003 24083304 ~ 24091230 (-) True f9a
XM_039812938.1 mRNA upstream 429756 24322057 ~ 24330760 (-) True zic6
XM_039813656.1 mRNA upstream 516375 24408676 ~ 24418311 (-) False LOC120566938
XM_039813655.1 mRNA upstream 516375 24408676 ~ 24418311 (-) True LOC120566938
unassigned_transcript_474 other downstream 512816 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 699813 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 709824 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 721396 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 725365 23161388 ~ 23161459 (-) True trnaw-cca_11
TU144931 other upstream 681140 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 969811 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1387302 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 1387302 25279603 ~ 25288086 (-) True G107989
TU145230 other upstream 2565694 26457995 ~ 26460707 (-) False rpl36a

Expression Profile