RNA id: XM_039813402.1


Basic Information

Item Value
RNA id XM_039813402.1
length 4924
RNA type mRNA
GC content 0.45
exon number 21
gene id arhgef6
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24387484 ~ 24453913 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCAccgcctctttttttttttttacttctagtAGAAGTGCGGATGTGAGTTGCGTATTGATACGGAACAGGCcgccagtttttgtttttttgtagcaATGCGTGCTTAGGCAATGATCATTTTGTGGAGCTATGAATCCAGAGGAGCAGACTGTAACGTGGTTAATATCACTAGGAGTGCTCAGCTCGCCTAAAAAGAACATAGCGGACCCGGAGGAGTTTTTGAAAACATCGTTGAAGGATGGGGTCGTCCTGTGCAAACTCACGGAGCGGCTCATACCTGGTTTCACTCCCAAGtaTTCCCAGGATCCGAGAACTGAAGCCGACTGCATTACCAACATCAGGGAGTTTTTAAGAGGATGCTCGTCATTGAAAGTGGAGGGGTTTGAACCAGAGTGGTTATACACTGGCGAGAATTTTGGCAAGGTTCTGACCACTTTGCTGGCAGTCAACTTTGCCACACAAGACTGTGCTACTGAAAGGTCATGTTCACAGTCCGGTGGCCACTCTCCTAGTCAGACGACAtcttcacacacactctcctctGCCAAATCCAAAGGCTCTCTGCGTAGACAATCCAAATCGGTGGAGATGTCTGAGAACGGTGGAGGTGGGCAGGTGATGGTGAAGGCCCGGTTCAACTTCAAGCAGAACAATGAGGATGAGCTGTCATTCAATAAAGGGGACTTGATCCATGTGCTGCGGCAGGAAGAGGGAGGATGGTGGGAGGGCACACTCAATGGCAAGACGGGCTGGTTCCCCAGCAACTACGTCCGAGAGATCAAACCCTGCGAGAAGCCATTGTCTCCTAAAGGAACTCCACTGACCAAGAACTACTATAGTGTGGTGGTACAAGACATCTTGGAACATGAGCGGGAATTTGTCAAAGAATTACAAACCGTGTTGAGTTGTTATCTACGACCTCTGCAAGCCAGTGACAAGCTGAGCAGTGCAGACAGCGCCACCCTGTGTGGAAATCTGGAGGAGATACTCACCTTCCAGCAGGCTCTATGTGTGGCTTTGGAGGACTGTACCAAAGTCCCAGAGGGCCAGCAGCGAGTGGCGGGCTGCTATTTAAACCTGATGTTTCAGATCAAGACTCTGTACCTGGCTTACTGTTCCAGCCATCCTTCAGCTGTTTCCATCCTCACTGACCACAGtGAGGAACTAGACAAGTTCATGGAGAGCCAGGGAGCCAGTGCTCCAGGGATCCTGACCCTGACCACCAGTCTCAGTAAGCCCTTCATGAGGCTCGACAAATACCCTACGCTGCTGCAGGAGCTAGAGAGACATGTGGAGGAAGCCCACCCAGACTATGCTGACATTGTAAAAGCGACCGCAGCATTTAGGAGCCTAGTGacaCAGTGCCAGGAACTGCGGAAGCGCAAGAACCTGGAGCTCCAGATCTTGTCAGAACCAGTGCGGGGCTGGGATGGAGACAGCATGAAGAGCCTGGGTCATGTGGCTTACATGTCCCAGGTCCATGTGAAAAATGGCTCCAGTGAGGAAAAAGAGGAGCGCTATCTAATGCTTTTCCCTAATGTGTTAGTCATGCTCTCCGCCAGTCCCCGGATGAGTGGCTTTATTTATCAGGGAAGACTGCCACTGACAGGCACCACAGTAACAAGACATTCAGAGGATGCAGACAATGCCCACTATGCCTTGGACATCACAGGAAGCATGATCGATCGTATAACAGTGTTCTGCAGTAGTGCCCAGGAGTTACAAGACTGGCTAGAGCACCTTCAGCCCTTTACCAAAGGAGGAAGCCCCACAGGCACCATCTCAAAGACTGTAGAAGGCAAGCCACAGAGCATGGTGGGCCCCCCCACTCACCTCTCCCACCTGGGCAGCCTCAGCGCCGTCAGTCGCAGCCCCCTGGAACCGCCAAAGATCAGCAAGCCCTGGTCTCTGAGTTGTCTGCGCCCTGCGCCCCCCCTCAAACCCTCTGCTGCACTGGGATACAAAGAGGACTCCAGCAAAAGCCCACGGCCCATGAAGAAGTTCCTGCCAGGCAATAGGAAAAAAGAGCGGAAGCCCTCTGATGACGAGGTTCAAACGAGGAAAAGCACGGTTGCGCTGGAGGAGGACGCCCAGATACTGAGGGTGATTGAGGCGTACTGCACAGGAGCCAGCCTGCACCAGAACACCACAGcggtGCGGAAAGAGTGCATCCCTCAGGTGCTTCTGCCAGAGGAAGAGAAGATCATTGTGGAGGAGATGAAGAGCAACGGGCAGACCGTTATTGAGGAAAAgaGCCTTGTTGATGCTGTGTATGCTTTAAAGGATGAGGTTCATGAACTAAAAAAGGAGAATAAGTGGATGAAGCAGTTTTTGGAGGAGGAGCAGAAGTCTCGCAAAGATCTGGAGAGAGTGGTTCGAAAACTGGCCAAGCAGAAGAATGATTCTGCTTGGGATGACGGCGGACACTGAACACATCCATACGATCatcctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgggcGTCTATGTTGTGTCTCCATATTTCAATCACACACAGCAGAGTTGGACTTTCTGACGACAATGCTTGGAGTTTCTTCACTTCAAGTGCTGGAGCttcatttgacatttttgattAAATCTGATCTGTCTTCCTGATCCAACCTCACTAGATGAGACCACACATATAGCTTCCTCGCGAAGCAGCTCAGCTAAACCAAGACTGGTAAAGTGGGATGTTTATCAAACATACTGCTTCTTGCTCGACTGGCACTGTGAACACTCCCCCAGGAAATGGAACAATTATGGACAAAAACAAGTTCTCCGCTGCTTCTTTTGCTTCAGTTAGAAATAGAAAAGGAGTACGAAGCCATCAGGTCCAATAGGTGTTCTCTTGCATGCACTTCTCTTACCAAGGGGACACATTTTCTTCTCCTCacataatttttttcattttcattttcatattttatttgtcaAAAGGATAATGGGGAAATGGATTTGTTGTGCTTTCGTGAGCATGTGCGATAGGCATTTCTAGACATTCACATTTTCCAAGCCATTTTGTAGGCGTTTAAGCAATTCAAACAGGTTAGCTCATCATGCTACATTCAGTTGTTTCCAAATGCAGCCttgactgtttatttaaaaactGCATGAATGTACAGTGTTTTTACAGTATGAATTCTGCATCAGAAATGTGATAATCAAGATATTCAGATATATAGTCCAAAGCTATCAGGGATGCAGCTGCATAATAGAATAGGAAAGGCTTAACTACATATCCTTTATAGACAAGAGTTCGCAAATAATGACAAAGATGTCACCCCTCCACTTCTTACTAAAATATGTACAAGTGTAattttaacacattaattacatAGCCTTGCTTtattctgattttttttcaaagagtaTTCCTTATTTATTGTTCACCCAAGCATTTAATTGTGGTGTTAGccttatatatattgttttgctGCCTTTACATTTGTCTGAAATTTTATTAAACTACATTGGTGTGAAGGCAAAACAAAACATCCTCATTTTGGCCCAAGGGAAAGTAGACATTTTTTCATCACAAAAGAGGgaaaatgattttaaaaatgaGTCTGACTTCGGAATTCAGAGGTTTTTGTTTGCAGCCTCTGTGGCCTCCTAACAGGGTCCTCCAGAGCTGATGGAGACAGGAAATAAAACGAAAGATTTATTTGTGGGTGTAGAGCTCAACTGTTTAAGTGCCTCCCGAAAGGTGTTCGATAAACTTAAGAGTTTAAGACTGGGACTAAATGCATGATTTATATTGAAAGTGTCACAGGTGGTTTGGTGTAATATTTCTCTAGCTTAAttggtatatatatctatatatagggtctaaaaaaacaaaccggTATTGGCATGCTTAAAGATGCAGCCTCTTTACAAAGACCCACAGCGGTACATTTCCTCATGaggttgagtgtgtgtgcactgtCAACTCTGTTATCTACTTGCTGTGCTGAAGAGCAGCGGTGGATGCTATTGAAATGCAATAAGTGACTGCTTTACTGCCTGACCTCTGGGTTAGTCCCAGCATTGAAGGTCAGATTTTGAGaaattgcaataataataatgtaagaATTAACCCAATTTATTAACCAAAAAGGGCCAGGCCATGTGGTTAATCCACCACACAGTTAGgctattaattattttccatttgCCTTTTATTTAATCTAGTCTCTTGATATTGATGATTGTTCAAAGATCACTGTCCAGGTCCTAATTTTCATCACATGTGatccaaaatgtaataatattgtACAATCCCTCAAGTGCTGTTTTTGTGCCTCTTTCCAGGGAGGTCAGAGTACTGTGTAGGGTGCAAGGCAGCACTGGTACATCTGCAGCAGAGatgtgtcttgctcaagggcacttcaGCAAGAAAAGAAGCTGATCTTTGATTGTTCTTCCTAATGGGACGTTTAGTTGGCAGCCAGATTCCCCTCAGTGTTACAGAGACTCTTGCTTCCTGTACAGATGTCTGACTCTCATAATGTTCACTGTTGAGATTAACATATTGCTGTTCCTGTACCctaaattgttttaattaagtACCACATACTCTTGTTTTCAATTCCCAATAGCCGCAGCGAGCACTTACTGGTGGGAGGGGGTTGAACTCAGTCTTCATTATGTTTATCTCCAGACcactgtgtgtattgttttcAAAAGGTTGTTCTATGCAATTATTGTTGTTGCAAGTATtgttatgctttttttctttctttctagaCACTCTGTACTCTGCGTTTGGTATGGTCATTCTTTTATTAAAAGTTTAATATAATATGTGAA

Function

GO:      GO:0005089,GO:0032319

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144714 lncRNA upstream 691 24427274 ~ 24427808 (+) True G107709
TU144713 lncRNA upstream 10206 24417591 ~ 24418293 (+) True G107708
TU144705 lncRNA upstream 14943 24412910 ~ 24413556 (+) True G107704
TU144561 lncRNA upstream 369250 24056541 ~ 24059249 (+) True G107596
XR_005640526.1 lncRNA upstream 451591 23946591 ~ 23976908 (+) True LOC120567136
TU144805 lncRNA downstream 102708 24556621 ~ 24558239 (+) True G107770
TU144827 lncRNA downstream 359735 24813648 ~ 24818151 (+) True G107790
TU144841 lncRNA downstream 403935 24857848 ~ 24859722 (+) True G107801
TU144847 lncRNA downstream 453439 24907352 ~ 24937765 (+) False G107803
TU144845 lncRNA downstream 454993 24908906 ~ 24911418 (+) True G107803
XM_039814052.1 mRNA upstream 2300 24420861 ~ 24426199 (+) True rbmx
XM_039814053.1 mRNA upstream 2300 24420861 ~ 24426199 (+) False rbmx
XM_039813657.1 mRNA upstream 20473 24404188 ~ 24408026 (+) True gpr101
XM_039812939.1 mRNA upstream 89567 24333709 ~ 24338932 (+) True zic3
XM_039813553.1 mRNA upstream 227006 24172468 ~ 24201493 (+) True fgf13a
XM_039813144.1 mRNA downstream 41756 24495669 ~ 24527611 (+) False map7d3
XM_039813137.1 mRNA downstream 43351 24497264 ~ 24527611 (+) True map7d3
XM_039813138.1 mRNA downstream 43351 24497264 ~ 24527611 (+) False map7d3
XM_039813141.1 mRNA downstream 43351 24497264 ~ 24527611 (+) False map7d3
XM_039813142.1 mRNA downstream 43351 24497264 ~ 24527611 (+) False map7d3
TU144527 other upstream 563225 23855525 ~ 23865274 (+) True LOC120566416
TU144403 other upstream 802210 23590328 ~ 23626289 (+) True G107487
TU144281 other upstream 933510 23492844 ~ 23494989 (+) True G107386
TU144289 other upstream 937141 23488301 ~ 23491358 (+) False LOC120566905
TU144826 other downstream 351287 24805200 ~ 24808701 (+) True G107789
TU144828 other downstream 387926 24841839 ~ 24843241 (+) False nox1
TU144869 other downstream 619300 25073213 ~ 25097002 (+) False apln
TU144871 other downstream 619300 25073213 ~ 25097002 (+) False apln
TU144872 other downstream 619300 25073213 ~ 25097002 (+) True apln

Expression Profile