RNA id: TU144742


Basic Information

Item Value
RNA id TU144742
length 4484
lncRNA type sense_over
GC content 0.43
exon number 7
gene id LOC120566461
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24288149 ~ 24381312 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGTATAATTTGATGATTTACTTATCTCTGCTGGGATTACCTCATTGGGCATTGGGATAGCCCATTGGTTATAACATAATCTTCTTCTAACTGAGCATGCGCGTTACcttaaaatatcacaatatagtGTGCATACCTCTGACAGTAGGCCCATGCTGTTGGAAAAGAGCAGAACATAACCATCAGCCAAAATGGTCCTCTTGTTCCTCCGTCTCATCTATCTCTATCCCTGCAGCTCCTGGCTATCTTCACCCTCTATGGCTCCTTCATGATGGCCCCCTAATCTCTGCCAGTGTGGTTCCATGTATGCATTGCAAGGCGGCTGTGTAATCAAGCCTGTGAACTCGACATCTGAAGGAAGGATTCTGTTTCTGATCACATCCCTATTGAAGTCCATCCATTCGATGAACATGGACGTGTTGACACGCTCAAGCTTGCACTACTTGCGATGTACCACATTTGAGGGGCCATGAATAATGCCAAGAAGCTTATAGGGAAAAGAAGACGCCACTTCTTCTCTCCAGCTTCCTACCACACAGCTGTATTCCTGCACAGTTAGGCCATCGAGCCGTTAATGAGTCCCAGCACTGATAATGAAGCCACAGAGGTGGTCTGAGCCAGTGTGGCACAGGAGCTGGAGCACAGAAGGAAGGTAGATTAGGATAATTACCTGGCCACGGGGGAACGATGAGTAAGATGTGTCACTTCCTCGATCGACGAAGGAGCAAGTGCGATATAATGAGGTGCAGACACCCTTTGCtcagaaagggaaaaaaaagaagaaaaaaaagaaaaGTGTTGTCCACATCCCTcacgtatgtatgtatttgttgtttATGTAGCTGTGCTTTAGGtctctcacacatactgtacgtaAGTCCTAAATAtacccacacacagagactttgaAGAGCCTATGAGGTCAGGTTTTAAATTATGGTCTGCACCCACACCAAGCTTTCTCTCCCCACTCCTGAAAATCCATTTTCCACACAATGCATTTCAAATGAAAGCAGCGTCACCATAACACGCCTTAGGAAACATTAAGCCATAGTGCAGTACTTTCATGTATGATAGCATAGCCCCTGTATGCTTTGATGTGCTCACTTTTTTAAtgctttattaataataacacacTGGCTCCTTCTCACACCCACATCAGCTTCTGGTGCTCCTTTTTCTCATCCTGAACAACATCCCTCACTCCTTCCAAGCCTCAGCTCCTTCATCCCTCCCCAGCCCCTGAGCCTTGTCTCAGGATTGGCCTGTTTGTGTTTGGGAGGGGGATTAGAGGGAAGGACATGGGCTTTGAGATGAAGAGAGTGACAAAGACCTATCAGAGGGCAGAGAGTACGGAGCGCTGCATCACCATTGGTTGCTGTGGTAATCAGACACGTCTTCATTTCTTCCAGCCATCCTCTCCGAAGTGCCCAGCTTTCATTTCCACGCCCGGGGAGGGAagcagggagaggaagagaggagggggtCAGGATTAGAGTTTCTGTTTGTgcatttaagtgtgtgtgtgcacgtgtttgCTTGCATGTTGTGTGCAGTAAACATCTTAGATATACAGAGGGATGAGCGCGTAGACACTGAGCACTCACCTTCTCAAGGCTGGCCAAAATACAAATGCTGGAACAGTTTAGTGTCGTTCTAGCTGAATGGGATGTTTGACTCATAGATATGTAAAACCTACTTAGGATACAAATTTctctcattatttttttttcccacatatTGTGCATTAGTGTCACAGGCAAAGGTACCCCAAAGAACACAAatgccaatgttttttttttttaacaatttcaaAGCAATGTCGGCAATTTACTGGATACACTTATAGCAGCCTCTCCACATTCACATGCGTGTGCAGATGTGCACAAACATCTGCTGAATTAATGtctgcttttgtgttttctttttattctttgttccTGTTTGatgtttctttcctctttctgttgtgTAGCATCATTAAATCTTGATGTTTGTTATTATAATTTCAGTCCACAACTTTTGCAGCAGTTTCTCGAGTCATTTAAATGCAATATGTGGTTGTGTTCTGTAAATTAATTATACTAAAGCAACAATTTTCCATTTCTTTCTAAATGTGCTCTGTGCAGCTAAATCTCCAAAAGCTCTACATGgatctgcatgtatttattttgtcatgTGTACCATACTGGCATGTATGCACACTCACCAATTAGTCAGTGTTATGCAATGTTTTATACACAGATTTGACAGCATTCTGCAGTGGAAATCCTTCCTAAAGTTCTCATATGATGCCTGTTGAGCTTGTTGTGCACCAGACTGTTGTCAGTATTTGCCTGCTTGTTAGGATGCAGCCAGTTGACTCTGGCTGTCTGAGCAGTGATATGACTGAGAGCAGTGGGGCTGGGCCCCAGCCGACTCCGCTCTCTTCCTCGTCCATAATAGACCTGCGTGGTCTGCAGACTCTCTGGGTTCACCTGGCTCCCCTCCCTGCCATCTCTGGCCAGATCAATCGCCTAGGCCGTCCTAGCACAGAGATCAGGGTCATTTTAAAAGGCCTCTTGCCCACTTCCTGCCACCTAGTGTTCCATTTCAGACAAAGGGTACATTTCCTTTCCATTCCCTCCACCCTCCGTTGCCCTTCTGTAAACAGGTTAAGGACATGGAGGCGGTACAGCTCCTCTCTGTGATCTCCTTCAGCCTCCTCCCCAGTTGTCCACAGAGTGAGAGATCAGTTCCATCTAAACACCACATAATCACAAACccatttaatgtaaaaaaaaaaaattgttggccTAAGAAAGCAGACCTCTTTACATGGAAGCGACTTGGTAATTTTTGGTTACCTTTACCTTTGGTTACAATCTTTTTTCATGGACTGGCAGGTGTTGAGTGGACTTAAATCTTGTATACAGTGCATCCATAAAATATTCTACATTAAGTGAGAAAAAACTACACACGGAGCATTATTATTCATTCATATGATATATTTTTATTCAGACatcattacattacagtatgatataaaaaaaaataaggtaaTGGTTTATAATGATGCATTAAATTAAGTGAACTTGTTGGCTCTCACTTGAAACATGTTTCATTATTAACTGATCAACAGATCTGCTATGGTATGAATCTCATTCCCTGTTGGTCAAGTCACAAATGGCAGGGCTATTGAACACACATTTTTCTCCATGAGGACTGTTGGACAATTAGCTCCAAGAATACATATTAATCAATCGAGATTTTTGAGTCTGTTTATAAAGcccagacattttttttccctccaataCATTAGCAGATCTCAGTATGTCCGCTACTCTTGTGAACAGGGATGAGAAGGAGATAGAGGGAGAGGAAATAAAGGTCTGATGAGTTTGGCAAAGAGAGGATGGAGGCTGAGACAGATGGCATGAAGTCTGCAGCACTCTGGCGTAGCTCGCCTGGTGCTAAAATCCTCCTCTCTCACATTCCAACAAATCCTACCAGGAGGCTGGGGAGTCTGTCACACCACTCCAAGGATCCACACGGCTCTCTtcacccccctcctctctcctccccctatTTTGTCGCCCGGGCCCAACCGAGCCTCTGACCACTCTGTATCATATTTTATCCTCACATATGTATACATTCACACATTAACATGTATAGAGGTTGACCATTACAGGCCTGGTACGATAAGAATCACCAGGGGGTGCAGATATGACCAAACACCGTCTGACTGCTCTTATGGAAAGGAACCAGGGGGGCTTAATTGAGAGAGGTGGCCTTTACTGACACTCCAGTATAAGAAATCTTATTCAGTAAACACTAGGCCAAATCACGGGGGAACTGTACAATCCATTTATATCAGAGGAAGAAGACATAAGAAGCTTTTTGATTAGTTTCACCACAGCCCGCATCAGCCCATGGTGTTGAACAAAAACACTGTAGCCCAATCTCAATCCAAACATGCACTTCTCAGACCCATATTCCAAGGCTCCCTGTGGGCATACTATCCTGAAATGGACAGTAAAATGTAACTGTGATTACACACAAAGCACAAAACCAACAACTGGATCATGGGCTCTACGTGACATCTTCATCTCCAAACACTGAAGATATCCTTTGAATTTCTGAAACACACTTTCTTTTACATCTTAAAGTGGTTCATCTAATAAGAACAAtctaatttattttacactgtGCTCTCTCCCCATGTCTCTTTCTCGCTGTCTTTCTGCCTGCCTTCTGTTTGTTCTAATGAATGACTTCTGAGATGAGGTACTGCTGTGAGGAGGTCACGGGGGGGCTTCAGAATTACATTATTGTTAATGATAATAAAAAGAACAATCTGTGCTGAACCTCTTGGatgtcttctcttctctccccaTATGGAATGATTGTTTTATCTGCTATTGTTTTGAAAAGCTTTACATGTTTGAAATGAAGTCCATGCAATTAAAATGCACAGTAAATatgcaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144657 lncRNA downstream 28803 24199499 ~ 24259346 (-) True G107667
TU144596 lncRNA downstream 299248 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA downstream 316969 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA downstream 395886 23889905 ~ 23892263 (-) False rab41
TU144586 lncRNA downstream 495647 23792054 ~ 23792502 (-) True G107610
TU144759 lncRNA upstream 101028 24432001 ~ 24453879 (-) False G107742
TU144778 lncRNA upstream 117148 24448121 ~ 24450769 (-) True G107755
TU144760 lncRNA upstream 120328 24451301 ~ 24453879 (-) False G107742
TU144763 lncRNA upstream 120328 24451301 ~ 24454134 (-) True G107742
TU144784 lncRNA upstream 137976 24468949 ~ 24469187 (-) True G107759
XM_039812624.1 mRNA downstream 196919 24083304 ~ 24091230 (-) True f9a
XM_039813210.1 mRNA downstream 387849 23894595 ~ 23900300 (-) True arr3b
XM_039813212.1 mRNA downstream 395850 23884588 ~ 23892299 (-) True rab41
XM_039813211.1 mRNA downstream 395851 23884588 ~ 23892298 (-) False rab41
XM_039813779.1 mRNA downstream 404692 23879061 ~ 23883457 (-) True stard14
XM_039813656.1 mRNA upstream 77703 24408676 ~ 24418311 (-) False LOC120566938
XM_039813655.1 mRNA upstream 77703 24408676 ~ 24418311 (-) True LOC120566938
XM_039813789.1 mRNA upstream 123832 24454805 ~ 24457209 (-) True cd40lg
XM_039812723.1 mRNA upstream 128124 24459097 ~ 24465511 (-) True tmtops3a
XM_039812764.1 mRNA upstream 142202 24473175 ~ 24476728 (-) True vgll1
XR_005640439.1 other downstream 395848 23886824 ~ 23892301 (-) False rab41
unassigned_transcript_474 other downstream 914141 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 1101138 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 1111149 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 1122721 23165357 ~ 23165428 (-) True trnaw-cca_12
TU144931 other upstream 242468 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 531139 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 948630 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 948630 25279603 ~ 25288086 (-) True G107989
TU145230 other upstream 2127022 26457995 ~ 26460707 (-) False rpl36a

Expression Profile