RNA id: TU144867


Basic Information

Item Value
RNA id TU144867
length 216
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G107821
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24947121 ~ 24947336 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAACTGCTGTGCATGACACTGCGACACACGAAGGCAAGGCACACCTTCCATTCGTGAGCAAACATACAAACccactgtatttatgtttgaCGGTTAAAAAGCGCAAACATAAATATCTAATTTATATAAACGGAAATTAGAGATAAACAGTAGGCGAGTATTTTTCCCAGGGATGTAACATAGACAGGGATGTAAGAGAACCAGGAACCAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144866 lncRNA upstream 179 24946738 ~ 24946942 (+) True G107820
TU144865 lncRNA upstream 1417 24945327 ~ 24945704 (+) True G107819
TU144864 lncRNA upstream 2581 24943550 ~ 24944540 (+) True G107818
TU144847 lncRNA upstream 9356 24907352 ~ 24937765 (+) False G107803
XR_005640455.1 lncRNA downstream 159104 25106440 ~ 25107622 (+) True LOC120566737
TU145067 lncRNA downstream 304789 25252125 ~ 25252468 (+) True G107958
TU145085 lncRNA downstream 324203 25271539 ~ 25273631 (+) True G107972
TU145084 lncRNA downstream 332274 25279610 ~ 25282207 (+) False rpl39
TU145103 lncRNA downstream 340783 25288119 ~ 25290199 (+) True G107981
XM_039813949.1 mRNA upstream 19153 24920307 ~ 24927968 (+) False srpx2
XM_039813948.1 mRNA upstream 19153 24920313 ~ 24927968 (+) True srpx2
XM_039813951.1 mRNA upstream 19153 24921217 ~ 24927968 (+) False srpx2
XM_039813745.1 mRNA upstream 53878 24870784 ~ 24893243 (+) False bcorl1
XM_039813958.1 mRNA downstream 672 24948008 ~ 24977281 (+) False zdhhc9
XM_039813957.1 mRNA downstream 5125 24952461 ~ 24977281 (+) False zdhhc9
XM_039813959.1 mRNA downstream 5798 24953134 ~ 24980800 (+) True zdhhc9
XM_039813356.1 mRNA downstream 126307 25073643 ~ 25097023 (+) False apln
XM_039814042.1 mRNA downstream 233652 25180988 ~ 25186479 (+) True clic2
TU144828 other upstream 103880 24841839 ~ 24843241 (+) False nox1
TU144826 other upstream 138420 24805200 ~ 24808701 (+) True G107789
TU144527 other upstream 1081847 23855525 ~ 23865274 (+) True LOC120566416
TU144403 other upstream 1320832 23590328 ~ 23626289 (+) True G107487
TU144281 other upstream 1452132 23492844 ~ 23494989 (+) True G107386
TU144869 other downstream 125877 25073213 ~ 25097002 (+) False apln
TU144871 other downstream 125877 25073213 ~ 25097002 (+) False apln
TU144872 other downstream 125877 25073213 ~ 25097002 (+) True apln
TU144873 other downstream 125877 25073213 ~ 25097002 (+) False apln
TU144875 other downstream 125877 25073213 ~ 25097002 (+) False apln

Expression Profile