RNA id: XM_039813625.1


Basic Information

Item Value
RNA id XM_039813625.1
length 484
RNA type mRNA
GC content 0.44
exon number 3
gene id ndufa1
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25263172 ~ 25264864 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTTCTTGTACTGTAGCGGTCGTCGAGGGAGTCGACATTTTGTTAGCTTCTTAGCAAAATAAACTGAGTCTTAGGGCAATTTTGTTGTTATCTAAGCGGCTCTCTGTCGCCTAACAGTTACCGGCTGTTATCATGTGGTATGAAATTCTGCCCGGCTTCGCCGTCATGACCGTGTGTTTGATTATTCCTGGCGTCGCCACCGCACAGATCCACAAGTTTACCAACGGAGGAAAGGAAAAGAGAATCGCTCGGTATCCGTGGCAGTGGTATCTGATGGAGAGAGACAAGCGAGTGTCGGGATCAGGACAACACGTTGACTCCAAGGGACTCGAGAACATCCACTGATGACAAAGAATATGAAGACCCTGATGAGAAGAAAGTTGTACATTAAAAGATTATATTTAACATTCAGCTGTTTGTTTTCAGTCTTTTAAGGCAATCCTCCTTGTTATCAAATAAACTGTTCCACACTGGAAACCTTC

Function

GO: NA

KEGG:

id description
K03945 NDUFA1; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145020 lncRNA downstream 76694 25180938 ~ 25186478 (-) True G107923
TU145024 lncRNA downstream 76694 25180938 ~ 25186478 (-) False G107923
TU144993 lncRNA downstream 189340 25073181 ~ 25073832 (-) True G107907
TU144988 lncRNA downstream 282375 24977124 ~ 24980797 (-) True G107903
TU144967 lncRNA downstream 372456 24890301 ~ 24890716 (-) True G107890
TU145122 lncRNA upstream 26753 25291617 ~ 25297266 (-) True G107992
TU145172 lncRNA upstream 383670 25648534 ~ 25648780 (-) True G108031
TU145177 lncRNA upstream 415228 25680092 ~ 25680437 (-) True G108036
TU145181 lncRNA upstream 509718 25774582 ~ 25774823 (-) True G108040
TU145209 lncRNA upstream 572466 25837330 ~ 25839330 (-) False diaph2
XM_039813585.1 mRNA downstream 5540 25252765 ~ 25257632 (-) True zbtb33
XM_039813587.1 mRNA downstream 6020 25252765 ~ 25257152 (-) False zbtb33
XM_039813586.1 mRNA downstream 6060 25252765 ~ 25257112 (-) False zbtb33
XM_039814350.1 mRNA downstream 24558 25233186 ~ 25238614 (-) True atp1b4
XM_039813249.1 mRNA downstream 62657 25198318 ~ 25200515 (-) True mcts1
XM_039813251.1 mRNA upstream 17937 25282801 ~ 25284565 (-) True sowahd
XM_039813252.1 mRNA upstream 19841 25284705 ~ 25290134 (-) True pttg1
XM_039813268.1 mRNA upstream 51434 25316298 ~ 25320522 (-) True ube2a
XM_039813267.1 mRNA upstream 101306 25366170 ~ 25432527 (-) True tnmd
XM_039812941.1 mRNA upstream 572466 25837330 ~ 26258199 (-) True diaph2
unassigned_transcript_475 other downstream 400988 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 684073 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 1370871 23886824 ~ 23892301 (-) False rab41
unassigned_transcript_474 other downstream 1889164 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 2076161 23184272 ~ 23187011 (-) False rnaseh2c
TU145115 other upstream 14739 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 14739 25279603 ~ 25288086 (-) True G107989
TU145230 other upstream 1193131 26457995 ~ 26460707 (-) False rpl36a
TU145357 other upstream 1724400 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 1800554 27065418 ~ 27065947 (-) True G108191

Expression Profile