RNA id: TU145085


Basic Information

Item Value
RNA id TU145085
length 225
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G107972
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25271539 ~ 25273631 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgagcTTAGTCTTGGGGAGAAGGAGGCGGTTTGAGTTTGTTGAACGGAGGAAATCGAGTTGTAGTTAGAGGGGTGAGTAGGCTAGTTCTTTCAGATAGGAGGGGGAGGCATTACCATAGATGCACTGGTGGGGAAGGATTATATTCAATCGTGGCGGAACCAGTTTTTCAGCATCTGCTAAGAAATAACCCCCCTTCAGAGTCCTCTGCTGCCAACAGCCACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145067 lncRNA upstream 19071 25252125 ~ 25252468 (+) True G107958
XR_005640455.1 lncRNA upstream 163917 25106440 ~ 25107622 (+) True LOC120566737
TU144867 lncRNA upstream 324203 24947121 ~ 24947336 (+) True G107821
TU144866 lncRNA upstream 324597 24946738 ~ 24946942 (+) True G107820
TU144865 lncRNA upstream 325835 24945327 ~ 24945704 (+) True G107819
TU145084 lncRNA downstream 5979 25279610 ~ 25282207 (+) False rpl39
TU145103 lncRNA downstream 14488 25288119 ~ 25290199 (+) True G107981
TU145107 lncRNA downstream 107082 25380713 ~ 25394758 (+) True G107985
TU145111 lncRNA downstream 112837 25386468 ~ 25387635 (+) True G107988
TU145158 lncRNA downstream 224985 25498616 ~ 25498866 (+) True G108020
XM_039813623.1 mRNA upstream 2309 25265515 ~ 25269230 (+) True upf3b
XM_039813624.1 mRNA upstream 8853 25258629 ~ 25262686 (+) True LOC120566922
XM_039813589.1 mRNA upstream 19896 25241567 ~ 25251643 (+) False tmem255a
XM_039813253.1 mRNA downstream 5937 25279568 ~ 25282197 (+) True rpl39
XM_039813258.1 mRNA downstream 17976 25291607 ~ 25310218 (+) False sept6
XM_039813254.1 mRNA downstream 17976 25291607 ~ 25310218 (+) True sept6
XM_039813256.1 mRNA downstream 17976 25291607 ~ 25310218 (+) False sept6
XM_039813259.1 mRNA downstream 17976 25291607 ~ 25307926 (+) False sept6
TU144869 other upstream 174537 25073213 ~ 25097002 (+) False apln
XR_005640591.1 other downstream 7317 25280948 ~ 25281080 (+) True LOC120567498
XR_005640445.1 other downstream 17976 25291607 ~ 25307926 (+) False sept6
unassigned_transcript_476 other downstream 47594 25321225 ~ 25321296 (+) True trnae-uuc_61
TU145245 other downstream 1187689 26461320 ~ 26467814 (+) False btk
TU145248 other downstream 1203191 26476822 ~ 26479149 (+) False timm8a

Expression Profile