RNA id: TU145172



Basic Information


Item Value
RNA id TU145172
length 247
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G108031
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25648534 ~ 25648780 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GACATTTAATAGTTTAATTATAAGCTGCTGTATACATTCAGTGATTATTCCGATTTTCATGTTGCCAGAAGCCATGGGTGAGACCAGCAAAACATTCAGCTACAAGATCTAGTTTGTTGTATGCAATTTGTCAattttcattcatatttttccaCATTGTACATAGTTTACTGCAAAGCAACATAAAACCACATTGCTGATGTGCAACACGGTTCTTCCAAGACATCAGTTTGTTCAAACATGATTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145122 lncRNA downstream 351268 25291617 ~ 25297266 (-) True G107992
TU145077 lncRNA downstream 383672 25263179 ~ 25264862 (-) False ndufa1
TU145020 lncRNA downstream 462056 25180938 ~ 25186478 (-) True G107923
TU145024 lncRNA downstream 462056 25180938 ~ 25186478 (-) False G107923
TU144993 lncRNA downstream 574702 25073181 ~ 25073832 (-) True G107907
TU145177 lncRNA upstream 31312 25680092 ~ 25680437 (-) True G108036
TU145181 lncRNA upstream 125802 25774582 ~ 25774823 (-) True G108040
TU145209 lncRNA upstream 188550 25837330 ~ 25839330 (-) False diaph2
TU145213 lncRNA upstream 188550 25837330 ~ 25838530 (-) False diaph2
TU145210 lncRNA upstream 188623 25837403 ~ 25839330 (-) False diaph2
XM_039813267.1 mRNA downstream 216007 25366170 ~ 25432527 (-) True tnmd
XM_039813268.1 mRNA downstream 328012 25316298 ~ 25320522 (-) True ube2a
XM_039813252.1 mRNA downstream 358400 25284705 ~ 25290134 (-) True pttg1
XM_039813251.1 mRNA downstream 363969 25282801 ~ 25284565 (-) True sowahd
XM_039813625.1 mRNA downstream 383670 25263172 ~ 25264864 (-) True ndufa1
XM_039812941.1 mRNA upstream 188550 25837330 ~ 26258199 (-) True diaph2
XM_039813376.1 mRNA upstream 809222 26458002 ~ 26460732 (-) True rpl36a
XM_039813375.1 mRNA upstream 830111 26478891 ~ 26483763 (-) False zgc:101583
XM_039813374.1 mRNA upstream 830111 26478891 ~ 26482962 (-) True zgc:101583
XM_039813379.1 mRNA upstream 838392 26487172 ~ 26517479 (-) True med12
TU145117 other downstream 360448 25279603 ~ 25288086 (-) True G107989
TU145115 other downstream 366335 25279603 ~ 25282199 (-) False G107989
unassigned_transcript_475 other downstream 786350 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 1069435 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 1756233 23886824 ~ 23892301 (-) False rab41
TU145230 other upstream 809215 26457995 ~ 26460707 (-) False rpl36a
TU145357 other upstream 1340484 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 1416638 27065418 ~ 27065947 (-) True G108191
TU145467 other upstream 1609467 27258247 ~ 27262120 (-) False LOC120567151
unassigned_transcript_477 other upstream 2130353 27779133 ~ 27779214 (-) True trnal-aag_2

Expression Profile