RNA id: TU145177


Basic Information

Item Value
RNA id TU145177
length 346
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G108036
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25680092 ~ 25680437 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACCCGATCTCactcaaaagcgtacaaataacacgggtttctaccgtgcaatgtgtacgagaaagtgaaattctacgtgcattacatacgcggagcgctccaattgaagtcatggggaccggtgcgttttatatgcacgcagctcgcgttaccacgttgtgtgttatcgcgagaacagcatcacacacaaaaacatagatatggttgggtttagagaaagaatgcagggaaaggctttaataacacaagaaaatcacaaaaacacactaataaacggttgggtttagggaagaaacattgggaaaggcttaacaaaaaaacactacaaagtcgcaaaaacgcgcc

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process

KEGG:

id description
ko00240 Pyrimidine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145172 lncRNA downstream 31312 25648534 ~ 25648780 (-) True G108031
TU145122 lncRNA downstream 382826 25291617 ~ 25297266 (-) True G107992
TU145077 lncRNA downstream 415230 25263179 ~ 25264862 (-) False ndufa1
TU145020 lncRNA downstream 493614 25180938 ~ 25186478 (-) True G107923
TU145024 lncRNA downstream 493614 25180938 ~ 25186478 (-) False G107923
TU145181 lncRNA upstream 94145 25774582 ~ 25774823 (-) True G108040
TU145209 lncRNA upstream 156893 25837330 ~ 25839330 (-) False diaph2
TU145213 lncRNA upstream 156893 25837330 ~ 25838530 (-) False diaph2
TU145210 lncRNA upstream 156966 25837403 ~ 25839330 (-) False diaph2
TU145208 lncRNA upstream 157075 25837512 ~ 25838530 (-) False diaph2
XM_039813267.1 mRNA downstream 247565 25366170 ~ 25432527 (-) True tnmd
XM_039813268.1 mRNA downstream 359570 25316298 ~ 25320522 (-) True ube2a
XM_039813252.1 mRNA downstream 389958 25284705 ~ 25290134 (-) True pttg1
XM_039813251.1 mRNA downstream 395527 25282801 ~ 25284565 (-) True sowahd
XM_039813625.1 mRNA downstream 415228 25263172 ~ 25264864 (-) True ndufa1
XM_039812941.1 mRNA upstream 156893 25837330 ~ 26258199 (-) True diaph2
XM_039813376.1 mRNA upstream 777565 26458002 ~ 26460732 (-) True rpl36a
XM_039813375.1 mRNA upstream 798454 26478891 ~ 26483763 (-) False zgc:101583
XM_039813374.1 mRNA upstream 798454 26478891 ~ 26482962 (-) True zgc:101583
XM_039813379.1 mRNA upstream 806735 26487172 ~ 26517479 (-) True med12
TU145117 other downstream 392006 25279603 ~ 25288086 (-) True G107989
TU145115 other downstream 397893 25279603 ~ 25282199 (-) False G107989
unassigned_transcript_475 other downstream 817908 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 1100993 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 1787791 23886824 ~ 23892301 (-) False rab41
TU145230 other upstream 777558 26457995 ~ 26460707 (-) False rpl36a
TU145357 other upstream 1308827 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 1384981 27065418 ~ 27065947 (-) True G108191
TU145467 other upstream 1577810 27258247 ~ 27262120 (-) False LOC120567151
unassigned_transcript_477 other upstream 2098696 27779133 ~ 27779214 (-) True trnal-aag_2

Expression Profile