RNA id: XM_039813376.1


Basic Information

Item Value
RNA id XM_039813376.1
length 515
RNA type mRNA
GC content 0.49
exon number 5
gene id rpl36a
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 26457995 ~ 26460732 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCTTGTGACGTCGACACATCTAGCGGATCCGATCTAGCATCTACCGCTCACCGCTGAGGCCTACATTAGGAACTGCTTCCGGCCTCAacctttctcttttcctctgcaTCGGGACGCAGCCATGGTGAACGTCCCGAAGACCCGCAGGACCTACTGCAAAAAGTGCAAGAAGCACCAGCCTCACAAAGTTACCCAGTACAAGAAGGGAAAGGACTCCCTCTATGCACAGGGTAAGAGGAGATACGACAGAAAGCAGAGTGGTTATGGTGGACAGACAAAGCCAATTTTCAGGAAGAAGGCTAAGACCACAAAGAAGATTGTGCTGAGGCTTGAGTGTGTAGAGCCCAACTGCAGATCCAAGAGAATGCTGGCTATCAAGAGATGCAAGCACTTCGAGTTGGGTggtgacaagaagagaaagGGCCAGGTCATCCAGTTCTAAACTGTGGGCTAGTCTTCTGGAGAAGTTGTCACGATTTtcaataaatgtattaaaacaTACTTTAGCCCTTT

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02929 RP-L44e, RPL44; large subunit ribosomal protein L44e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145241 lncRNA downstream 1297 26456045 ~ 26456705 (-) True G108084
TU145239 lncRNA downstream 1297 26456132 ~ 26456705 (-) False G108084
TU145240 lncRNA downstream 1407 26456045 ~ 26456595 (-) False G108084
TU145238 lncRNA downstream 1407 26456132 ~ 26456595 (-) False G108084
TU145237 lncRNA downstream 3602 26454196 ~ 26454400 (-) True G108083
XR_005640459.1 lncRNA upstream 9879 26470611 ~ 26471567 (-) True LOC120566756
TU145351 lncRNA upstream 411108 26871840 ~ 26872060 (-) True G108175
TU145354 lncRNA upstream 486518 26947250 ~ 26952535 (-) True G108178
TU145355 lncRNA upstream 502534 26963266 ~ 26963583 (-) True G108179
TU145359 lncRNA upstream 547080 27007812 ~ 27008037 (-) True G108182
XM_039812941.1 mRNA downstream 199803 25837330 ~ 26258199 (-) True diaph2
XM_039813267.1 mRNA downstream 1025475 25366170 ~ 25432527 (-) True tnmd
XM_039813268.1 mRNA downstream 1137480 25316298 ~ 25320522 (-) True ube2a
XM_039813252.1 mRNA downstream 1167868 25284705 ~ 25290134 (-) True pttg1
XM_039813251.1 mRNA downstream 1173437 25282801 ~ 25284565 (-) True sowahd
XM_039813375.1 mRNA upstream 18159 26478891 ~ 26483763 (-) False zgc:101583
XM_039813374.1 mRNA upstream 18159 26478891 ~ 26482962 (-) True zgc:101583
XM_039813379.1 mRNA upstream 26440 26487172 ~ 26517479 (-) True med12
XM_039813382.1 mRNA upstream 58083 26518815 ~ 26569298 (-) False wu:fb13g09
XM_039813383.1 mRNA upstream 58083 26518815 ~ 26556743 (-) False wu:fb13g09
TU145117 other downstream 1169916 25279603 ~ 25288086 (-) True G107989
TU145115 other downstream 1175803 25279603 ~ 25282199 (-) False G107989
unassigned_transcript_475 other downstream 1595818 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 1878903 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 2565701 23886824 ~ 23892301 (-) False rab41
TU145357 other upstream 528532 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 604686 27065418 ~ 27065947 (-) True G108191
TU145467 other upstream 797515 27258247 ~ 27262120 (-) False LOC120567151
unassigned_transcript_477 other upstream 1318401 27779133 ~ 27779214 (-) True trnal-aag_2
TU145627 other upstream 1377116 27837848 ~ 27839107 (-) False LOC120567057

Expression Profile