RNA id: TU145467


Basic Information

Item Value
RNA id TU145467
length 915
RNA type TUCP
GC content 0.60
exon number 2
gene id LOC120567151
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27252395 ~ 27262701 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCGGCGGCTTGTCAGTAAATGAGCCCACCCTTCACACAGTGTGTATGAGGGAAACCGAACCAGACAGTGACGGATCTGGTCCTACAGTCATCAGCTGCCTGTCACACCAGCACGCCACAGTACCGACCCGGAGCCTTCCGCCGCTGTGACACCTGGcggggatggagggagagatgcAGCCCGCAGATGAAGGGCCCTGCGCCCCGAAGATGTGCCGACAACAACGGGGTCCGTACAGCACCCTAAAAACCTTCCAGAGCAAACGCTCGGCGGGCAAGTCGCGCTTTGACAGGTCCGCTGTGGTCGAGGTGCCTCTCTTTGGCGACGGACATCACTTCACTTTCCATCCCGAGCAGCAGCATCATTTCCAGCCGcaccatcatcaccaccaccaccaccaccagcagcgtCTGCAGCAGCTCCACCAAACCAGCGTCGctatcagcagcagcagcagcagccaacaGCATCACCCGACGCTTCAGCAGCAGGGTCGTTTCCCATGTGAGAACAGGCCCAGCAGCAGGGTCCCGACATCCACCTCAGCGGCGGCGGCAGCATCTCCTGGTACCCAGCAGCAGCGCGCCAGCAGCGGCAGAGCGGAGCCCAGATTGTCTCCAGACTGCACTTATGGTATCAGCTCAGAGAATCGTCTCATCCTGGATGCCTTTGCCCAGCAGTGTAGCCGAGTCCTCAGCCTCCTCAACAACGGCCGCCTCCTGgagccctcctcctccttcacctcCAACATCAAGCTGGAGGAGGGGCCAGGGGCGGTACAGGGGCCTCACTGCTCCTCACTGGGGAAGACCAAACCTGAAGAGAGCTCTTCCACCACAGACCCAGAAGAGGAGACCCAACAAAGCCATTTGAACCAACAACAGACCTCTGCCGTTCTTCGCATCTTCACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145466 lncRNA downstream 4863 27252395 ~ 27253384 (-) False LOC120567151
TU145371 lncRNA downstream 166572 27091382 ~ 27091675 (-) True G108194
TU145364 lncRNA downstream 188228 27068521 ~ 27070019 (-) False LOC120566767
TU145363 lncRNA downstream 222162 27035515 ~ 27036085 (-) True G108186
XR_005640461.1 lncRNA downstream 225080 27032026 ~ 27033167 (-) True LOC120566771
TU145476 lncRNA upstream 7250 27269370 ~ 27334074 (-) False atp8a1
TU145500 lncRNA upstream 132038 27394158 ~ 27395983 (-) True LOC120567396
XR_005640565.1 lncRNA upstream 132204 27394324 ~ 27396031 (-) False LOC120567396
TU145586 lncRNA upstream 495673 27757793 ~ 27758695 (-) True G108351
TU145587 lncRNA upstream 509731 27771851 ~ 27772071 (-) True G108352
XM_039813976.1 mRNA downstream 8070 27234682 ~ 27250177 (-) False LOC120567138
XM_039813973.1 mRNA downstream 8070 27234682 ~ 27250177 (-) False LOC120567138
XM_039813972.1 mRNA downstream 8070 27234682 ~ 27250177 (-) True LOC120567138
XM_039813975.1 mRNA downstream 8071 27234682 ~ 27250176 (-) False LOC120567138
XM_039813354.1 mRNA downstream 24960 27215856 ~ 27233287 (-) True sfxn5b
XM_039813997.1 mRNA upstream 7481 27269601 ~ 27378121 (-) False atp8a1
XM_039813996.1 mRNA upstream 7481 27269601 ~ 27378121 (-) True atp8a1
XM_039813999.1 mRNA upstream 7481 27269601 ~ 27378120 (-) False atp8a1
XM_039813998.1 mRNA upstream 7481 27269601 ~ 27378120 (-) False atp8a1
XM_039814000.1 mRNA upstream 11050 27273170 ~ 27378121 (-) False atp8a1
TU145368 other downstream 192300 27065418 ~ 27065947 (-) True G108191
TU145357 other downstream 257236 26989264 ~ 27001011 (-) True G108181
TU145230 other downstream 797540 26457995 ~ 26460707 (-) False rpl36a
TU145117 other downstream 1970161 25279603 ~ 25288086 (-) True G107989
TU145115 other downstream 1976048 25279603 ~ 25282199 (-) False G107989
unassigned_transcript_477 other upstream 517013 27779133 ~ 27779214 (-) True trnal-aag_2
TU145627 other upstream 575728 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other upstream 575728 27837848 ~ 27839107 (-) False LOC120567057
TU145691 other upstream 759617 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 3398792 30660912 ~ 30661623 (-) True G108777

Expression Profile