RNA id: XM_039813203.1


Basic Information

Item Value
RNA id XM_039813203.1
length 1549
RNA type mRNA
GC content 0.46
exon number 9
gene id aurkb
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27780132 ~ 27790211 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTAGCACCCCGACCAATCGCGTTCGTCAAGGGTAGCATTTTGAAAACGTTGGCGGCCGAAGAAGTTCAAAATAACGCTGGGCTTTCTTTACTAAAACGTTCTAACTACACTTTGTCACTACGATGCAGaaTAAGGAAAATTATGAGCCCAGGGGTTTCCAACGACCGTTAGTAACACCAAGCATGGTGGCAGGTCCACAGCGTGTTCAGGTGAAGCCACGAACAGAGATGGACAAAAATGCCATCACAGGCCCTGGGAGAGAGTGTGTAGGCTCGTCCTCCAGTGCAGCCTCAAAAAAAATCTCCATCGATGACTTTGACATCGGTCGACCACTAGGGAAGGGCAAATTTGGTAATGTCTACCTTGCGAGGGTGAAGAAGCTGCAGACCATCGTGGCGCTGAAGGTGTTGTTCAAGTCACAGATGGAGAAGGAGGGTGTGGAGCATCAACTCAGGAGGGAGATTGAGATTCAGGCACATCTCAAGCACCCCAACATTTTGCGCTTCTACAATTATTTCCATGACCGAAAGAGGGTCTTCCTGGTGCTTGAGTACGCCCCACGTGGTGAAATGTACAAGGAGCTACAAAGATGTGGAAGATTTGATGAACAGCGTACTGCCACGTACATGGAGGAGATATCCGATGCACTGATGTATTGCCATGAGAAGAAAGTGATTCATCGTGACATCAAGCCGGAGAATCTGCTGCTTGGCTATCGTGGAGAGCTGAAAATTGCCGATTTTGGTTGGTCCGTCCATGCACCTTCTCTAAGACGTCGTACAATGTGCGGGACACTGGACTACCTCCCTCCAGAGATGATCGAGGGGCACACTCACAGTGAGAAGGTGGACCTGTGGTGCATCGGGGTCCTCTGCTACGAATGCTTGGTTGGCAACCCCCCTTTTGAAACTGCCAGCCATTCAGAAACATACAAAAGAATTATGAAGGTGGATTTAAAGTTCCCTAAAAACGTCTCAGCCGGTGCACAGGACCTGATCAGCAAGCTACTTCGCCATAGTCCTATTGATCGTCTCTCACTACAGAGTGTCATTGATCACCCATGGGTGCGCGCCAACTCCCGCAGAGTCCTACCCCCCATCTGCCCCACCAAGAAATCCTGAGTCCACCTGGCCTGCCACCGAGGGTGTTTATCTGTCCTTCACAAGTGACTCTGGGCCAGCATGTTTTGGTTTCACTGCCATGGGCTTCAAACTGCCGTTATTCTGGCACATTTTATGATGGGTATAAATGCAtacccacttttttttttatattgtacagTGTGATGTCATTATCTATGTCTAGTATGTTGCCTAgaggtgtgttgtgtttttattgtccTTTCTTCTCTGAAacctttttaaatgaacacagcTCAATTTTGAATTTCTGTATCTGACAACAGTGTTGACACCAAAGTACTACTGTTAGACTGATTAAAGCTGACTATATTCTCAAATAGTTTAAAATGAGGTGTTTGGGGTGGaaagcatgttttattttgcctcAAGCTATACTTTAAATTTCTAATAAATATTATACAATGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145588 lncRNA downstream 7151 27772676 ~ 27772981 (-) True G108353
TU145587 lncRNA downstream 8061 27771851 ~ 27772071 (-) True G108352
TU145586 lncRNA downstream 21437 27757793 ~ 27758695 (-) True G108351
XR_005640565.1 lncRNA downstream 384101 27394324 ~ 27396031 (-) False LOC120567396
TU145500 lncRNA downstream 384149 27394158 ~ 27395983 (-) True LOC120567396
TU145614 lncRNA upstream 629 27786110 ~ 27786783 (-) False aurkb
TU145629 lncRNA upstream 52087 27837568 ~ 27839107 (-) True LOC120567057
XR_005640513.1 lncRNA upstream 52857 27838338 ~ 27838921 (-) False LOC120567057
TU145664 lncRNA upstream 167998 27953479 ~ 27954107 (-) False LOC120566991
XR_005640501.1 lncRNA upstream 182583 27968064 ~ 27970362 (-) True LOC120566995
XM_039813905.1 mRNA downstream 9877 27756523 ~ 27770255 (-) False bod1l1
XM_039813904.1 mRNA downstream 9877 27756523 ~ 27770255 (-) True bod1l1
XM_039813233.1 mRNA downstream 36050 27740794 ~ 27744082 (-) True nkx3-2
XM_039813237.1 mRNA downstream 44829 27705215 ~ 27735303 (-) False rab28
XM_039813201.1 mRNA upstream 556 27786037 ~ 27790211 (-) True aurkb
XM_039813204.1 mRNA upstream 14345 27799826 ~ 27802336 (-) True LOC120566642
XM_039813205.1 mRNA upstream 17877 27803358 ~ 27814189 (-) True mcm7
XM_039813069.1 mRNA upstream 29804 27815285 ~ 27836229 (-) True LOC120566545
XM_039813848.1 mRNA upstream 66206 27851687 ~ 27865367 (-) False LOC120567058
unassigned_transcript_477 other downstream 918 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 518012 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 714185 27065418 ~ 27065947 (-) True G108191
TU145357 other downstream 779121 26989264 ~ 27001011 (-) True G108181
TU145230 other downstream 1319425 26457995 ~ 26460707 (-) False rpl36a
TU145627 other upstream 52367 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other upstream 52367 27837848 ~ 27839107 (-) False LOC120567057
TU145691 other upstream 236256 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 2875431 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 2884050 30669531 ~ 30670849 (-) True G108781

Expression Profile