RNA id: XR_005640513.1


Basic Information

Item Value
RNA id XR_005640513.1
length 359
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120567057
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27837568 ~ 27839107 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCACCCTGTATTGTTTCTCTTGAGGAAAACTTACCATGATATTCCTACATTGTGTCTCTGGTGGTTATTAATGAGTTTGTGCCACcttgtagcctacttttaaaTATCACTTTTCTTAGTGCGTTTGTTATTTTACGTATGCTGACGCACCTACATTTCTGCTGCGACGTGTATCTTAAATATTTTTATACGCTTGAATTAGGCTAGATGTGGAGTCTTACCGGAGATTTGAGTCAGCGGAGCGGTGCCTGTGCTGTACCCCTTCTCTGCGTACACCTGCCGGGTATCGGCGCAGCTCCTCCCCGAAGAAGCCACGGCGCTCCGGGTCCCGGACAGTGCACAGACCGCGCAGAGCAG

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145614 lncRNA downstream 51555 27786110 ~ 27786783 (-) False aurkb
TU145588 lncRNA downstream 65357 27772676 ~ 27772981 (-) True G108353
TU145587 lncRNA downstream 66267 27771851 ~ 27772071 (-) True G108352
TU145586 lncRNA downstream 79643 27757793 ~ 27758695 (-) True G108351
XR_005640565.1 lncRNA downstream 442307 27394324 ~ 27396031 (-) False LOC120567396
TU145664 lncRNA upstream 114558 27953479 ~ 27954107 (-) False LOC120566991
XR_005640501.1 lncRNA upstream 129143 27968064 ~ 27970362 (-) True LOC120566995
TU145677 lncRNA upstream 142129 27981050 ~ 27981447 (-) True G108422
TU145679 lncRNA upstream 143037 27981958 ~ 27982329 (-) True G108424
XR_005640500.1 lncRNA upstream 164613 28003534 ~ 28004849 (-) False LOC120566994
XM_039813069.1 mRNA downstream 2109 27815285 ~ 27836229 (-) True LOC120566545
XM_039813205.1 mRNA downstream 24149 27803358 ~ 27814189 (-) True mcm7
XM_039813204.1 mRNA downstream 36002 27799826 ~ 27802336 (-) True LOC120566642
XM_039813201.1 mRNA downstream 48127 27786037 ~ 27790211 (-) True aurkb
XM_039813203.1 mRNA downstream 52857 27780132 ~ 27785481 (-) False aurkb
XM_039813848.1 mRNA upstream 12766 27851687 ~ 27865367 (-) False LOC120567058
XM_039813847.1 mRNA upstream 12766 27851687 ~ 27865366 (-) True LOC120567058
XM_039813751.1 mRNA upstream 69999 27908920 ~ 27910963 (-) True LOC120566982
XM_039813755.1 mRNA upstream 76157 27915078 ~ 27917448 (-) True LOC120566987
XM_039813757.1 mRNA upstream 86503 27925424 ~ 27927535 (-) True LOC120566989
unassigned_transcript_477 other downstream 59124 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 576218 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 772391 27065418 ~ 27065947 (-) True G108191
TU145357 other downstream 837327 26989264 ~ 27001011 (-) True G108181
TU145230 other downstream 1377631 26457995 ~ 26460707 (-) False rpl36a
TU145691 other upstream 182816 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 2821991 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 2830610 30669531 ~ 30670849 (-) True G108781
XR_005640397.1 other upstream 3548786 31387707 ~ 31423481 (-) False LOC120566409
TU146377 other upstream 3592099 31431020 ~ 31485976 (-) True LOC120566557

Expression Profile