RNA id: TU146077


Basic Information

Item Value
RNA id TU146077
length 1683
lncRNA type sense_over
GC content 0.41
exon number 4
gene id gask1b
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 30346978 ~ 30356856 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCGGATGTTGTGCGTTCCTCCCTGGTTTGAGTTTGGCTAAAAAAAGACACTCAACCATGATATTAACATAAGTTCTAATGGGGAAGTCTCGCGTTCACTGGCTGCGCTTCCCTTTTCTAAGATTGACCAGCAGCTTTCGAAGATGGCCAGCCCTGTCCAGTGGTGTCATGGGATGCATCTCTCTACCCAGAAGGCCTTGCTGAAGGCCGGTCGACCGTGAGGTTAACATGGGGGGAGTACCAGAACTCCCTGAAACAGAAGTGTTGGCATAAAAACATCAGCCCAAAGCCTGACTCCGGATGCTTCACAGTTCATCACTATGAGTGGAGTAAACTGGCTCTGTTTGACTTCTTGTTACAGATTCACAACCGTCTGGATCAGAGTTGCTGTGGATTCAGGCCCAGGCAGGAGGATGTTTGTGTGGAACTCGGCCACCATGCTCTATGTGGGGACCCAAACCACATACaactgacaaacatcatccacaGGGATCAGGACCCCAGACACCTGGTCTTCACCATCAACAAGGGGTTCTTCGACCGCAATGAGGACAACTTGGACTTCAGGCTCCTGGAAGGAATCAAAGAGCTGCCAGAGCAGGCAGTGTCCGTGCTGAAGAGCAAGAGGCTGAGGGAGAAGCTCCTCCAGTCTCTTTTCCTGGACCAGATATACTGGGAGAGCCAGGGCGGCCGGCAGGGCATCGACAAGCTGATCGATGTAATTGAGAGGCGGGCCAAAGTCCTCCTCACCTACATCAATGCTCATGGGATCAAAGTCATCAAAATGCACGTATGATGCGAGTCACATCAATCAAGTGGCGAAATTACTGAGATGTGCCTTCAATGCGTCCCTTCAGAATGTCCCTTTACAAGCCACTGGAACTTTATCCATTTACATTGGCTACATTTTGTAAAGTGGCTCTGGGAAAAGAAAAGCTATCTAATATCTAAAAAGGATGTGTGCCAATGATTTAATATCAATTTATATCACAAGAGTGTGAGAGCATATGGTGTTGAGTAAAACTGTCCCTACTCTTCAGGATCATACAATTTTAATGTGAAATATTGGAAAAATGAAACAAGATTATTGAGAAATTACAGATTTTTCTTTATACATTTGTAAAAGATAACAATTATCATATTGCTAATGAATGActaattataaattaaattccCCACTATAATTTTTAAAACAGCATAAGTTGTGCTGTTGTTAACTCTTTGATAGAAAGCCATTCAAGTCATTTGCGGTTACGGAAACCTATCATTTGCATATACTAAGAGAGGCTAATTTGACATTTCAAATTAGCCTAACTTTTACTAAATGAAAatacttccttcttcatttaTTTCTTCCCTACAGGTGAATACACTGCCATCATTATGTACAGATTAGAATATGCTGCAGTTATAACTTTCGCTTCCAGTGTAATTTGCATTGTGTATGAACGGAATGCACTAAATGATACGTTATTTTCTTCTCTGCTGGTTAAGTGTGTTTCTGGAACTAAGATGTTCTTAGCCTATAGCTAACAAGCCACAACCCATCCAGTTGGCTTGTTTGTGGTCACACGTTATACACTGAATACAATATTTCCAttctaataaattatttaatcCACAGTcttaaacatttttctttttacaaaactCCCAAGAAATGACACCATTTTATAAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146068 lncRNA downstream 64351 30275864 ~ 30282627 (-) True G108702
TU145917 lncRNA downstream 570557 29723824 ~ 29776421 (-) True G108600
TU145907 lncRNA downstream 596442 29553459 ~ 29750536 (-) False LOC120567321
TU145909 lncRNA downstream 596442 29626656 ~ 29750536 (-) False LOC120567321
TU145908 lncRNA downstream 596442 29651261 ~ 29750536 (-) False LOC120567321
TU146087 lncRNA upstream 30666 30387521 ~ 30387854 (-) True G108718
TU146091 lncRNA upstream 45805 30402660 ~ 30403036 (-) True G108722
TU146159 lncRNA upstream 296015 30652870 ~ 30654526 (-) True G108772
TU146179 lncRNA upstream 376704 30733559 ~ 30733770 (-) True G108785
TU146211 lncRNA upstream 645793 31002648 ~ 31004486 (-) True G108810
XM_039812588.1 mRNA downstream 162286 30139809 ~ 30184692 (-) True pdgfc
XM_039812589.1 mRNA downstream 162287 30139809 ~ 30184691 (-) False pdgfc
XM_039812590.1 mRNA downstream 175785 30139809 ~ 30171193 (-) False pdgfc
XM_039813901.1 mRNA downstream 244059 30090948 ~ 30102919 (-) True neil3
XM_039812699.1 mRNA downstream 318840 29881190 ~ 30028138 (-) False si:dkey-237h12.3
XM_039813632.1 mRNA upstream 180972 30537827 ~ 30548407 (-) True ppid
XM_039813633.1 mRNA upstream 196321 30553176 ~ 30555189 (-) True LOC120566929
XM_039813230.1 mRNA upstream 442382 30799237 ~ 30974285 (-) False fstl5
XM_039813229.1 mRNA upstream 442382 30799237 ~ 30974285 (-) True fstl5
XM_039813231.1 mRNA upstream 442382 30799237 ~ 30974282 (-) False fstl5
TU145691 other downstream 2323749 28021737 ~ 28023229 (-) True G108433
TU145627 other downstream 2507871 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other downstream 2507871 27837848 ~ 27839107 (-) False LOC120567057
unassigned_transcript_477 other downstream 2567764 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 3084858 27258247 ~ 27262120 (-) False LOC120567151
TU146164 other upstream 304057 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 312676 30669531 ~ 30670849 (-) True G108781
XR_005640397.1 other upstream 1030852 31387707 ~ 31423481 (-) False LOC120566409
TU146377 other upstream 1074165 31431020 ~ 31485976 (-) True LOC120566557
TU146455 other upstream 1482687 31839542 ~ 31844234 (-) False tlx2

Expression Profile