RNA id: TU146169



Basic Information


Item Value
RNA id TU146169
length 917
RNA type TUCP
GC content 0.64
exon number 2
gene id G108781
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 30669531 ~ 30670849 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCCCCGTACACACACTCTCATGGTCTGGGAGTCTCAGGTGTATGCTGTGCCACTGGCTTTGGCTTCCTCAGAGCGATTAGTTTGGAAGACAAGGACtcaccctcctcttcctcctcagctTCTTGTTCCTCGGCCGGTGAGCGTGTGCGGTGGAGGCCGCCCGTTCGCTGTTTGGCCCCCTGGTGGGCCAGGTGGGAGTCGGGCGACTGGGTGACCATGCGCGAGCGCTGCAGAGCCGTGGTGTAGTCTGGTGGCCGGCGGCCGGAGTGGGTCGCCGTGGACGTGGTAACAGACGGGGCCGGGTGCTGCGCTTCAGCGAGGTCGGAGATGGTCAGGGCGGTGTAGCCGGGGGGAGTTGGGGGAGGCTCCCGGTAACGGCTTTCTTTCCGCGTAAGGAGGCCTTTACCCCCAGCGGTGATAGGTGATGGTGAGGGCCGGCCGAGCTGCTTGGCCTCCTCCGACCCGGTGGATGTGATGCTACTTGTTTCTGGGTCGGCGTTGACGtccttccctcctctcctcttaaTGGTGCCAGTGTCTCCCTCAGAGTCCTCTCCCCAGTACGCAgcggaggatgaggaggagctgGCGGATGCCCAGCTCCCCCTGGCCTGGGCTGCCCACAGCGCAGCAGGCCCCCCTAATAAGGCCTCTGGTCCGCCAGGAGGGAGTCCTCCAATGCCCCCTCCGCCTCCACCTCCACCAAAGGCCAGAGTCTCCCAGCTACGCCCCTGCTGCATGGTCTGAATGTTGTCGTGGGAACCAGAGGAGCAGGAAGTCCAGGAGCCGCGGCCGCTGTCTGCAGCATCGAGGGAAACGCGGTCGCCCTGATCCTGGGTCAGCTCCTCCGAACTGGGGGAGGAGAGCACTGTAGGGCAGCCGGTGTAAATGCCTCGACAGTCCTGCATCGATGAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146159 lncRNA downstream 15005 30652870 ~ 30654526 (-) True G108772
TU146091 lncRNA downstream 266495 30402660 ~ 30403036 (-) True G108722
TU146087 lncRNA downstream 281677 30387521 ~ 30387854 (-) True G108718
TU146077 lncRNA downstream 312676 30346978 ~ 30356855 (-) False gask1b
TU146068 lncRNA downstream 386904 30275864 ~ 30282627 (-) True G108702
TU146179 lncRNA upstream 62710 30733559 ~ 30733770 (-) True G108785
TU146211 lncRNA upstream 331799 31002648 ~ 31004486 (-) True G108810
TU146236 lncRNA upstream 459414 31130263 ~ 31131659 (-) True G108828
TU146248 lncRNA upstream 504014 31174863 ~ 31175459 (-) True G108840
TU146291 lncRNA upstream 549243 31220092 ~ 31235817 (-) True G108854
XM_039813633.1 mRNA downstream 114342 30553176 ~ 30555189 (-) True LOC120566929
XM_039813632.1 mRNA downstream 121124 30537827 ~ 30548407 (-) True ppid
XM_039812540.1 mRNA downstream 312675 30347037 ~ 30356856 (-) True gask1b
XM_039812589.1 mRNA downstream 484840 30139809 ~ 30184691 (-) False pdgfc
XM_039813230.1 mRNA upstream 128388 30799237 ~ 30974285 (-) False fstl5
XM_039813229.1 mRNA upstream 128388 30799237 ~ 30974285 (-) True fstl5
XM_039813231.1 mRNA upstream 128388 30799237 ~ 30974282 (-) False fstl5
XM_039813772.1 mRNA upstream 600377 31271226 ~ 31300495 (-) False anxa5a
XM_039813771.1 mRNA upstream 603187 31274036 ~ 31300495 (-) True anxa5a
TU146164 other downstream 7908 30660912 ~ 30661623 (-) True G108777
TU145691 other downstream 2646302 28021737 ~ 28023229 (-) True G108433
TU145627 other downstream 2830424 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other downstream 2830424 27837848 ~ 27839107 (-) False LOC120567057
unassigned_transcript_477 other downstream 2890317 27779133 ~ 27779214 (-) True trnal-aag_2
XR_005640397.1 other upstream 716858 31387707 ~ 31423481 (-) False LOC120566409
TU146377 other upstream 760171 31431020 ~ 31485976 (-) True LOC120566557
TU146455 other upstream 1168693 31839542 ~ 31844234 (-) False tlx2
XR_005640453.1 other upstream 2292891 32963740 ~ 32979661 (-) False slc49a3
TU146990 other upstream 3763889 34434738 ~ 34457330 (-) True G109390

Expression Profile