RNA id: XM_039812681.1



Basic Information


Item Value
RNA id XM_039812681.1
length 1217
RNA type mRNA
GC content 0.55
exon number 5
gene id tlx2
representative False

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 31839542 ~ 31851757 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtgATCAGGGTGCCGGCCCACAGACCCATGCCGCCTCCGCCGCCGCCCGCCGCTGCTGCACCTCATCCGCCCCCTTCGGCACATCCGCCATGCATCGGACCCGGCATCGCCTCGGTACCCGGGATGGGCATGGGGAATGCGGCAAACTTCACCTTCCCGTGGATGGAGAGCAGTAGGAGGTTTGCAAAGGACAAATTGACAGgggagcaggcagaggagagccGAGCTGGAGAGGCCACAGGGGGGCCGGGGTCTGCCGggtccctctgtcctctccccAAGGGAGACATCGGCAGGGTCCCTGTCTGGAGCACTATGGAGACATTAGCCAAATGCTATTACCCCGAGCTCGCTCACCTGCGAGACGGCAATGGCCTTCTAGCAGACTATCCTTTTCCAAAGGGGGCTTGCCAAGCTTCCCTCTCACCCTTCTCCGTGACCCGTCGTATCGGCCACCCTTACCAGAACCGGACGCCGCCCAAGAGGAAAAAGCCTCGCACCTCCTTCAGCCGAGTTCAGATCTGCGAACTGGAGAAACGTTTCCATCGGCAGAAGTACCTGGCATCGGCTGAGCGCGCCACCTTGGCCAAGGCCCTGAAGATGACAGATGCACAAGTCAAGACCTGGTTTCAGAACAGACGGACAAAATGGCGgagacagactgcagaggagagagaggccgAGAGGCAGCAGGCCAACCGACTGATGCTGCAGCTTCAGCAGGAAGCGTTCCAGAAGACGTTGAGCCAGCCTCTGCAGCCGGATCCGCTCTGCCTGCACAACTCCTCCCTGTACGCCCTGCAGAACCTGCAGCCCTGGGCAGACGACAATAAGCTGACGGTCTAAAAGAGAGGAGGGCACTTTATCCATAAGTGCCAGGAAACAAATGGACACCTCTGTACATGCCCAACTATCAAGACTGTCCCCTCTTTTGCCTCTGGATCCCTCATGAGGCAGCAGAGACTCTCTGCCAATAATGGCAAAAAAAGACCTCCTGTTTTTCGCTTTCAACTTTGTACAATGTAGTAAATGCATGTTTCAACCCTTTTCTGTGTGCACTCGGAGGTACCATTGAAGTCAGCTGCCATTGAGGTGGACTGCAGTGTTCAAGTGGTAGTGGATTGGTGGAACTCCCGATGACGAATTCCTCATTATTATGTTCAATTTAAAGGTGTTTTATATTAAATGATATTGTGACTTTTTGAAAAGATGACAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146379 lncRNA downstream 397401 31431020 ~ 31442247 (-) False LOC120566557
TU146378 lncRNA downstream 406745 31431020 ~ 31432903 (-) False LOC120566557
XR_005640385.1 lncRNA downstream 459295 31375354 ~ 31380353 (-) True LOC120566353
TU146291 lncRNA downstream 603831 31220092 ~ 31235817 (-) True G108854
TU146248 lncRNA downstream 664189 31174863 ~ 31175459 (-) True G108840
TU146467 lncRNA upstream 43486 31895243 ~ 31966892 (-) True G108977
TU146498 lncRNA upstream 142389 31994146 ~ 31996173 (-) True G109007
TU146615 lncRNA upstream 938293 32790050 ~ 32827346 (-) True G109092
TU146618 lncRNA upstream 939624 32791381 ~ 32893526 (-) False hopx
TU146621 lncRNA upstream 939624 32791381 ~ 32893526 (-) False hopx
XM_039813892.1 mRNA downstream 6329 31814992 ~ 31833319 (-) True npm1b
XM_039813893.1 mRNA downstream 6370 31814992 ~ 31833278 (-) False npm1b
XM_039812572.1 mRNA downstream 43944 31783765 ~ 31795704 (-) False fgf24
XM_039812571.1 mRNA downstream 43951 31783765 ~ 31795697 (-) True fgf24
XM_039814430.1 mRNA downstream 99704 31731977 ~ 31739944 (-) False pcgf1
XM_039814307.1 mRNA upstream 137131 31988888 ~ 31993101 (-) True cetn4
XM_039813245.1 mRNA upstream 160340 32012097 ~ 32025028 (-) True nudt6
XM_039813218.1 mRNA upstream 461792 32313549 ~ 32354995 (-) True ankrd50
XM_039813818.1 mRNA upstream 577489 32429246 ~ 32436812 (-) True LOC120567032
XM_039814422.1 mRNA upstream 953617 32805374 ~ 32823497 (-) False LOC120567451
TU146377 other downstream 353672 31431020 ~ 31485976 (-) True LOC120566557
XR_005640397.1 other downstream 416167 31387707 ~ 31423481 (-) False LOC120566409
TU146169 other downstream 1168799 30669531 ~ 30670849 (-) True G108781
TU146164 other downstream 1178025 30660912 ~ 30661623 (-) True G108777
TU145691 other downstream 3816419 28021737 ~ 28023229 (-) True G108433
XR_005640453.1 other upstream 1111983 32963740 ~ 32979661 (-) False slc49a3
TU146990 other upstream 2582981 34434738 ~ 34457330 (-) True G109390
TU147216 other upstream 4037622 35889379 ~ 35889709 (-) True G109589
TU147929 other upstream 5272493 37124250 ~ 37129506 (-) True G110040
TU147954 other upstream 5295856 37147613 ~ 37218236 (-) False G110046

Expression Profile