RNA id: TCONS_00069081


Basic Information

Item Value
RNA id TCONS_00069081
length 873
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id XLOC_034328
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 172766 ~ 173638 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggacaaactggttgcagcgggaaagccctccacacagaggtaagcagtcagctgttaAGCACCGTAAGGagtggcgtcataccaccccacagcgttcgcttaaaaaattaaatgcagccaaacGTAACTCCGGATACATAATTCAAGGTCTCCAGAAAGGTCCATGGCACTATGCTTTCAGAATCAGGCTGATTTCAGCGTTGTCCTGCGTCGTCTGTTGTGTGTTCATGCAGTGTACAGACAGAACGGAGGCCAATAAACTCTACTGATCAACAAATGGACGGTTTCCTGACATGTCCGAAATGTTTCTCTGCTCTCATGAGCGAATCGCACTGATGAATCAAGACTACGAACCGATTGAGTTGAACTCGgtaagtacatttacatggacaccaatactctgattaagagtctacaatataaacagatttttaatgaccttaatctgactaatcATAATCGTCTATGACGTCTATTGTTTCCCTTTTGCTGGTTTCCTTTTACATTTCTAGGATATGTGGGTTGGCTGTGTTGGATGTCAATCATTCGGGACATGGACTGATGTACGATGACGCAGTTAAGAAGAGCCTCAGTCAATGCGCTGTAAGATAGGACGTCTTAGATGATGAAGGTTTACTTTATTATGTAGTTCTAGGGGAAGAGTTTAATGGGATAATTAgttgacttttgttttatttttggttgtgttTGGCACTGTCCCTTTGTCCTCCTTATGCCTGTTAAACTTggtttattgttttctttttttgtgagaAATCATTGTCCTATATAACGACTTTAATGTGAAACTTTATTTTtccataaacatttaaaaacacacagcTTGTTTATAATAAACCAGTTCACTTAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069082 lncRNA upstream 36837 210475 ~ 211779 (-) True XLOC_034329
TCONS_00067028 lncRNA upstream 578367 752005 ~ 753203 (-) True XLOC_034331
TCONS_00069083 lncRNA upstream 655352 828990 ~ 854962 (-) True XLOC_034334
TCONS_00069084 lncRNA upstream 741082 914720 ~ 1021545 (-) False XLOC_034336
TCONS_00068645 lncRNA upstream 741082 914720 ~ 1036789 (-) False XLOC_034336
TCONS_00067024 mRNA downstream 162148 7658 ~ 10618 (-) True XLOC_034327
TCONS_00067023 mRNA downstream 162160 7658 ~ 10606 (-) False XLOC_034327
TCONS_00067025 mRNA upstream 463959 637597 ~ 735118 (-) True XLOC_034330
TCONS_00067026 mRNA upstream 568879 742517 ~ 753231 (-) False XLOC_034331
TCONS_00067029 mRNA upstream 604659 778297 ~ 804515 (-) True XLOC_034332
TCONS_00067031 mRNA upstream 635278 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067030 mRNA upstream 635278 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067027 other upstream 569686 743324 ~ 752101 (-) False XLOC_034331
TCONS_00067041 other upstream 1029483 1203121 ~ 1203239 (-) True XLOC_034346
TCONS_00067051 other upstream 1839163 2012801 ~ 2012916 (-) True XLOC_034359
TCONS_00067064 other upstream 2094538 2268176 ~ 2285368 (-) True XLOC_034367
TCONS_00067083 other upstream 3525152 3698790 ~ 3706778 (-) True XLOC_034388