RNA id: TCONS_00067028


Basic Information

Item Value
RNA id TCONS_00067028
length 419
lncRNA type retained_intron
GC content 0.52
exon number 2
gene id XLOC_034331
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 742517 ~ 753231 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAATCACCGTAAAACGACGATAAAAATCGCAGACGGCGCGGGCGGCGATCGGTGAAGCCGCTTTACCGGGGATCGAGCGAGTTTCTGCGGTTTCTTCTGGACTTTAACTCAGACTGAGGGACCGGGCGAGCGCCGTCGCCGCTCCAGCGCCGAGATGCCGAGCAAGAAGAAGAAATACAACGCCAGATTCCCGCCGGCTAGAATAAAGAAGATTATGCAGACTGATGAAGAAATCGGAAAAGTGGCGGCTGCAGTTCCTGTCATCATCTGTATCCTTTACACAGcgtaaacaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgtctcagTCACGCACACACCTTTCATTAGGTTCCTGGAGGTGCATCTTTATGTGTGTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0017054 negative cofactor 2 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0001046 core promoter sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-400 Predicted to enable several functions, including RNA polymerase II general transcription initiation factor activity; core promoter sequence-specific DNA binding activity; and transcription coactivator activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; positive regulation of transcription by RNA polymerase II; and transcription by RNA polymerase II. Predicted to be part of negative cofactor 2 complex. Predicted to be active in nucleus. Orthologous to human DRAP1 (DR1 associated protein 1).

Ensembl:

ensembl_id ENSDART00000173901

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069082 lncRNA downstream 540226 210475 ~ 211779 (-) True XLOC_034329
TCONS_00069081 lncRNA downstream 578367 172766 ~ 173638 (-) True XLOC_034328
TCONS_00069083 lncRNA upstream 75787 828990 ~ 854962 (-) True XLOC_034334
TCONS_00069084 lncRNA upstream 161517 914720 ~ 1021545 (-) False XLOC_034336
TCONS_00068645 lncRNA upstream 161517 914720 ~ 1036789 (-) False XLOC_034336
TCONS_00069085 lncRNA upstream 231701 984904 ~ 985757 (-) True XLOC_034337
TCONS_00069086 lncRNA upstream 237288 990491 ~ 991614 (-) True XLOC_034338
TCONS_00067025 mRNA downstream 16887 637597 ~ 735118 (-) True XLOC_034330
TCONS_00067024 mRNA downstream 741387 7658 ~ 10618 (-) True XLOC_034327
TCONS_00067023 mRNA downstream 741399 7658 ~ 10606 (-) False XLOC_034327
TCONS_00067029 mRNA upstream 25094 778297 ~ 804515 (-) True XLOC_034332
TCONS_00067031 mRNA upstream 55713 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067030 mRNA upstream 55713 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067032 mRNA upstream 59852 813055 ~ 823304 (-) True XLOC_034333
TCONS_00067033 mRNA upstream 111289 864492 ~ 878473 (-) True XLOC_034335
TCONS_00067041 other upstream 449918 1203121 ~ 1203239 (-) True XLOC_034346
TCONS_00067051 other upstream 1259598 2012801 ~ 2012916 (-) True XLOC_034359
TCONS_00067064 other upstream 1514973 2268176 ~ 2285368 (-) True XLOC_034367
TCONS_00067083 other upstream 2945587 3698790 ~ 3706778 (-) True XLOC_034388
TCONS_00067112 other upstream 3324531 4077734 ~ 4077871 (-) True XLOC_034401

Expression Profile

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