RNA id: TCONS_00069083


Basic Information

Item Value
RNA id TCONS_00069083
length 229
lncRNA type read_through
GC content 0.51
exon number 2
gene id XLOC_034334
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 828990 ~ 854962 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATTGAGCAGCAGAAGGACGATGATCGAGCGCATTTCTGTCAACACTTTCCAGAAGCAGACGAGTTTCTGACCAGACTGGAGAATCACGAGGACGGAACTCACCGCAGACACACACTCGAGCTCCGGGAAACACGGGGAAACCCGGTACAATGATGACTGTAGATCAGCCCGAGCCCTTCAGCGCATTAATGAGCAAATATAAAGAGAAAATGGGCGAGACTCTGGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067028 lncRNA downstream 75787 752005 ~ 753203 (-) True XLOC_034331
TCONS_00069082 lncRNA downstream 617211 210475 ~ 211779 (-) True XLOC_034329
TCONS_00069081 lncRNA downstream 655352 172766 ~ 173638 (-) True XLOC_034328
TCONS_00069084 lncRNA upstream 59758 914720 ~ 1021545 (-) False XLOC_034336
TCONS_00068645 lncRNA upstream 59758 914720 ~ 1036789 (-) False XLOC_034336
TCONS_00069085 lncRNA upstream 129942 984904 ~ 985757 (-) True XLOC_034337
TCONS_00069086 lncRNA upstream 135529 990491 ~ 991614 (-) True XLOC_034338
TCONS_00069087 lncRNA upstream 153077 1008039 ~ 1036788 (-) True XLOC_034336
TCONS_00067031 mRNA downstream 5495 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067030 mRNA downstream 5495 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067032 mRNA downstream 5686 813055 ~ 823304 (-) True XLOC_034333
TCONS_00067029 mRNA downstream 24475 778297 ~ 804515 (-) True XLOC_034332
TCONS_00067026 mRNA downstream 75759 742517 ~ 753231 (-) False XLOC_034331
TCONS_00067033 mRNA upstream 9530 864492 ~ 878473 (-) True XLOC_034335
TCONS_00067034 mRNA upstream 208010 1062972 ~ 1108935 (-) False XLOC_034340
TCONS_00067035 mRNA upstream 208014 1062976 ~ 1101071 (-) False XLOC_034340
TCONS_00067037 mRNA upstream 208014 1062976 ~ 1101694 (-) False XLOC_034340
TCONS_00067036 mRNA upstream 208014 1062976 ~ 1101694 (-) True XLOC_034340
TCONS_00067027 other downstream 76889 743324 ~ 752101 (-) False XLOC_034331
TCONS_00067041 other upstream 348159 1203121 ~ 1203239 (-) True XLOC_034346
TCONS_00067051 other upstream 1157839 2012801 ~ 2012916 (-) True XLOC_034359
TCONS_00067064 other upstream 1413214 2268176 ~ 2285368 (-) True XLOC_034367
TCONS_00067083 other upstream 2843828 3698790 ~ 3706778 (-) True XLOC_034388
TCONS_00067112 other upstream 3222772 4077734 ~ 4077871 (-) True XLOC_034401

Expression Profile

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