RNA id: TCONS_00069086


Basic Information

Item Value
RNA id TCONS_00069086
length 1124
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id XLOC_034338
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 990491 ~ 991614 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTTTCTGTTGGAAGGTGTGATGTGGTCATTGTTGACTGGGTTGTTTCTGTTGGAAGTTGTGATGTGGTCATTGTTGACTGGGTTGTTTCTGTTGGAAGTTGTGATGTGGTCATTGTAGACTGGGTTGTTTCTGTTGGAATTTGTGATGTGGTTATTGTTGACTGGGTTGTTTCTGTTGGAAGTTGTGATGTGGTCATTGTTGACTGGGTTGTTTCTGTTGGAAGTTGTGCTGTGGTCGATGTTGACTGACCTTCCGTTGTAGTTTGGGTTTCAGTTTGTATTGGTTGTGAAGTAGTTACAGACTGAGGTGTATTTGTAGACTGAGCACTTGTTGAGATTGTTGACTGGGTTGTTTCTGTTGAAAGTTGTGATGTGGTCATTGTTGACTGGGTTGTATCTGTTGGAAGTTGTGATGTGGTCGATGTTGACTGACCTTCCGTTGTAGTTTGGGTTTCAGTTTGTATGGGTTGTGAAGTAGTTACAGACTGGGGTGTAGTTGTTGGCTGGGCACTTGTTGAGAATGTGGACTGGGTTGTATCTGTTGGAAGTTGTGATGTGGTCATTGTTGACTGGGTTTCACTTGTACTTTGGATTTCAGTTTGTATGGGTTGTGAAGTAGTTACAGACTGGGGTGTATTTGTAGGCTGGGCACTTGTTGAGATTGCTGACTGGGTTGTTTCTGTTGGAATTTGTGATGTGGTCATTGTTGACTGGGTTGTATCTGTTGGAAGTTGTGATGTGGTCATTGTTGACTGGCCTTCCGTTGTAGTTTGGATTTCAGTTTGTATGGTTGGTGAAGTAGTTAATGACTGGGGTGTATTTGTAGGCTGGGCACTTGTTGAGAAGGTTGACTGGGTTGCTTCTGTTGGAAGTTGTGATGTGGTTGATGTTGACTGACCTTCCGTTGTAGTTTGGGTTTCAGTTTGTGTGGTTGGTGAAGTAGTTACAGACTGGGGTGTATTTGTAGGCTGGGCACTTGTTGAGATTGTTGACTGGGTTGTTTCTGTTGGAAGTTGTGATGTGGTCATTGTTGACTGGGTTTCACTTGTACTTTGGATTTCAGTTTGTATGGGTTGTAAAGTAGTTGATGACTGGGGTGTATTTGTAGACTGAGCACTTGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069085 lncRNA downstream 4734 984904 ~ 985757 (-) True XLOC_034337
TCONS_00069083 lncRNA downstream 135529 828990 ~ 854962 (-) True XLOC_034334
TCONS_00067028 lncRNA downstream 237288 752005 ~ 753203 (-) True XLOC_034331
TCONS_00069082 lncRNA downstream 778712 210475 ~ 211779 (-) True XLOC_034329
TCONS_00069081 lncRNA downstream 816853 172766 ~ 173638 (-) True XLOC_034328
TCONS_00069087 lncRNA upstream 16425 1008039 ~ 1036788 (-) True XLOC_034336
TCONS_00069088 lncRNA upstream 64060 1055674 ~ 1061239 (-) True XLOC_034339
TCONS_00068646 lncRNA upstream 120689 1112303 ~ 1133023 (-) False XLOC_034341
TCONS_00067038 lncRNA upstream 132210 1123824 ~ 1136586 (-) True XLOC_034341
TCONS_00068647 lncRNA upstream 159596 1151210 ~ 1152972 (-) True XLOC_034343
TCONS_00067033 mRNA downstream 112018 864492 ~ 878473 (-) True XLOC_034335
TCONS_00067031 mRNA downstream 166996 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067030 mRNA downstream 166996 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067032 mRNA downstream 167187 813055 ~ 823304 (-) True XLOC_034333
TCONS_00067029 mRNA downstream 185976 778297 ~ 804515 (-) True XLOC_034332
TCONS_00067034 mRNA upstream 71358 1062972 ~ 1108935 (-) False XLOC_034340
TCONS_00067035 mRNA upstream 71362 1062976 ~ 1101071 (-) False XLOC_034340
TCONS_00067037 mRNA upstream 71362 1062976 ~ 1101694 (-) False XLOC_034340
TCONS_00067036 mRNA upstream 71362 1062976 ~ 1101694 (-) True XLOC_034340
TCONS_00067039 mRNA upstream 148191 1139805 ~ 1148539 (-) True XLOC_034342
TCONS_00067027 other downstream 238390 743324 ~ 752101 (-) False XLOC_034331
TCONS_00067041 other upstream 211507 1203121 ~ 1203239 (-) True XLOC_034346
TCONS_00067051 other upstream 1021187 2012801 ~ 2012916 (-) True XLOC_034359
TCONS_00067064 other upstream 1276562 2268176 ~ 2285368 (-) True XLOC_034367
TCONS_00067083 other upstream 2707176 3698790 ~ 3706778 (-) True XLOC_034388
TCONS_00067112 other upstream 3086120 4077734 ~ 4077871 (-) True XLOC_034401

Expression Profile

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