RNA id: TCONS_00067035


Basic Information

Item Value
RNA id TCONS_00067035
length 3777
RNA type mRNA
GC content 0.58
exon number 28
gene id XLOC_034340
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 1062972 ~ 1108935 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgTGGAGTGGCACGCTCGGTAAGATGAGTTCAGACGGCGGTGGGCGTCCGGTGAAGGTGGGCTCAGTGGTGGAGGTGATCGGGAAGGGTCAGCGGGGGACCGTGGCCTACATCGGCGCCACACTCTTCGCCTCTGGGAAATGGGTCGGGGTCATTCTGGACGAAGCCAAAGGCAAGAACGACGGCACAGTGCAGGGAAAACGCTACTTCACCTGCGAGGAGAATCATGGGATATTCGTCAGACAGtctcagATCCAGCTGATGGATGATGGGGGCAGTTCAGCCACATCTCCAGAGACCCCAGACTCAGGTGTGGCTAAGCTGCTGAAGAAAGAGATCCAGGAGACACCGAAGACTGCCAAGCAGACTCCAGCAGTAAAGAAGCCTCCTGTGCGCCGTAGTACCAAGTGGAGTACACCGGGCCGTCTGTCCACCTCCAGCTCCCTCCCCTCTCTCATTATGACCGGCCGTCCCTCAGTCGGCGGGTCGGCTCTGTCTGAATCGGTGTTAGCAGAGAGCGAGTCCTCCTCGTCCACTCAGATGAGTCTGGCGGCACCTGTGGTCCCGCAGCCCAGCACTGCATCTACTCCTGCTCCAGCCACACCCAGCAaggAGGAGGAGAGTCTGCGCGCTCAGCTGAAGGATCTGGAGGAGAAGCTGGAGACTCTGCGTATGAAGCGCTCGGAGGATAAAGCCAAGCTGAAGGAGATGGAGAAATACAAGATCCAGCTGGAGCAGCTGCAGGAGTGGAGGAGCAAGATGCAGGAGCAGCAGAACGACCTGCAGAAGCAGCTCAAGGAGGCCAagaaggaggCTCGCGAGGCTCTGGAGGCTAAAGACCGCTACATGGAGGAGATGGCGGACACTGCAGACGCTATAGAGATGGCCACACTGGACAAGGAGATGGCGGAGGAGCGAGCGGAGTCCCTGCAACAGGAGACCGAAAGCCTGAAGGAGAAGCTGGAGGAGCTGACCATGGACATGGAGATACTCAAACATGAGATCGAGGAGAAGGGCTCAGATGGAGCAGCGTCCAGCTATCATGTCAAACAGCTGGAGGAGCAGAACGCACGTCTGAAAGAAGCTCTTGTcaggatgAGGGATCTGTCCTCCTCAGAGAAGCAGGAGCATGTGAAGCTGCAGAAACAGATGGAGAAGAAGAACTCTGAGCTGGAGACGCTGCGCTCACAGAAGGAGAAGCTGCAGGAGGAGATGAAGCTGGCGGAGGACACCATCGATGAGCTGAAGGAGCAGGTGGACGCAGCTCTGGGTGCAGAGGAGATGGTGGAGACGCTGACGGAGAGAAATCTGGACCTGGAGGAGAAAGTGCGGGAGCTGCGGGAGACCGTCAGTGACCTGGAATCCATCAACGAGATGAACGATGAGCTGCAGGAGAACGCACGGGAGACGGAGCTGGAGCTGCGGGAACAGCTGGATCTGGCCGGAGCACGGGTTCGAGAGGCGCAGAAGAGGGTGGAGGCGGCACAGGAGACACTGGCGGATTACCAGCAGACCATCAACAAATACAGAGAGCTCACCACGCACCTACAGGAAGTGAACCGCGAGCTGACCAATCAGCAGAGCAGCTCCGCTGAGCAGCTCCAGCAGCCGGCAGCGGAACTCTTCGACTTCAAGATCAAGTTTGCGGAGACTAAAGCCTACGCTAAGgCCATAGAAATGGAGCTGCGTAAGATGGAGGTGAGCCAGGCGAACCGTCAGGTGTCTCTGCTGACCTCCTTCATGCCTGAGTCTTTCCTGCGGCACGGCGGAGATCACGACTGCATCCTGGTGCTGCTGCTCATCCCCAGACTCATCTGCAAGGCGGAGCTGATCAGTAAACAGGCGCAGGAGAAGTTTGATCTGACTGGCGGGTCGCTGGAGAGAGCTGGACTGCGAGGAGCTGCTGGAGAACAGCTGAGCTTCGCTTCAGGACTGGTTTATTCTCTGACGCTCCTGCAGGCCACGCTGCATAAATATGAGCTGgctctgagtgtgtgtggtgtagaCGTGTATAAGCGCATGGGCATGCTCTACTCTGAGATGTGTGTTCACGAGCGCTCGCTGGACTTCCTGATCGACCTGCTGCATAAAGACCAGCTGGACGAGACGGTGCAGGTGGAGCCGCTCACTAAAGCCATCAAATACtaccagcatcTGTACAGTGTTCATCTGTGTGATCAGCCTGAGGACTGCACTGTCCAGCTGGCCGACCACATCAAGTTTACCCAGAGTGCTCTGGACTGTATGGGGTCGGAGGTGGGCCGTCTGCGGGCGTTTCTGCAGGCGGGACAGGAAGGGGCGGAGCTCTGTGTGCTGCTAAAGGACCTGGACACTTCCTGTGGAGACATCCGTCAGTTCTGCAAGAAGATCCGCAGGAGGATGCCAGGAACTGATGCTCCGGGAATACCTGCAGCACTGCGCTTCTCTGAGcaggtGAGCGAGGCGCTGGCGGACAGCAGGAAGCAGCTGGCGCGTGTGGTGGCGGTGCTACAGGAAGTGTCTGCGGCCGGCGCTCAGATGATGGCGCCACTGCAGGAGCAAGAGGGACTGAGCGCTGTGAAGATCGAGGATGTGGCCTTTAAAGCAGTGGAGCAGgtGTACGGCACACAGGGACTGAACCCGTACGAGTGTCTGCGTCAGTCCTGCAGCGCCGTCATCGCCACCATGAACAAGATGGCCACCGCCATGCAGGAGGGAGAGTACGACTCGGAGAGACCACAGCGCCcgcctcCTCCAGTGGAGACGCGTGCGGCTGCGGTGCGAGCGGAGATGACGGACGCTGAGGGTCTGGGGAACAAACTGGAGGATCGAGAGACCGTCATCAAGGAGCTGAAGAAGTCCCTCAAGATAAAGGGCGAGGAGCTGAGCGAGGCGAACGTTCGTCTGAGTTTGTTGGAGAAAAAGCTGGACACGTCGACCAAAGATGCAGACGAGCGGGTGGAGAAGATCCAGACCAAACTAGATGAAGCTCTGAACACTCTAAAGAAGAAGGAGAAagAGTTCGAGGAGACCATGGACGCGCTACAGGCTGACATCGACCAGCTGGAGTCCGAGAAGGCGGAGCTTAAGCAGAGGATCAGCAGCCAATCACGAGCCACTGAAGGTCTTCGGGGGCAACCAGCGTCTGGAATCGCATCTATTGTCACCGGGAATGttgcagGAGGGATGCTGTCAGCTCCAGCAGGTGTCTCAGGTGTGGTTCAGGTGGTTGATTCTCCACTCCTGAAGCAGCAGATCGATGTCCAGCGAATCGCCATCAAGCAGCTCAAGAGCGAAAACTACAGActcaagGCGGAGCGGATGCGTGCGCAGCTGTCATCGCTGCCGCCACTGCAGGTGCCGAACATGAAGAGTGTGATGATGAAGGAGAACACAGCCGCTGGGGCCCTACAGAGGAAGACCGACGTACTGCTGCACAACCTGATGAAGATGAGCGCAGGACTCAAAGTGGTGGACATCACCGGCAAAACCACagcgagTGCAAGTGCTCAGCTGCTGGAGCAGACGGCGAAGATGAAGTCTCTCAGTGACGCTCTGGATAAACTGCAGgcTGAAGTGTCGCAGCATGTGGTTTCCCAGCAGCCCGGAGCGTCGGTGCCGTCCGACTTTGCCACCTTCCCCACGGCCACTTTCGTTAAGgcgCAGCAGGAGCAACAGAGTGGCTGTGTGTTGGTGTCGAAGCTGATGATCCCGTGCGCTCGAGGAAAAGAGCAGAAGCACACACTCGTCCTGTCACAGCAGCAGCTCCAGCGCGTGCACCACCTGCTCATgacgtaa

Function

GO:

id name namespace
GO:0045176 apical protein localization biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0007097 nuclear migration biological_process
GO:0048663 neuron fate commitment biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0010842 retina layer formation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0000776 kinetochore cellular_component
GO:0030424 axon cellular_component
GO:0000922 spindle pole cellular_component
GO:0005875 microtubule associated complex cellular_component
GO:0035371 microtubule plus-end cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051010 microtubule plus-end binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070117-2205 Predicted to enable microtubule plus-end binding activity. Acts upstream of or within several processes, including apical protein localization; nuclear migration; and retina morphogenesis in camera-type eye. Predicted to be located in cytoskeleton. Predicted to be part of microtubule associated complex. Predicted to be active in several cellular components, including axon; kinetochore; and microtubule cytoskeleton. Is expressed in head; muscle; nervous system; presumptive neural retina; and trunk. Human ortholog(s) of this gene implicated in Perry syndrome; amyotrophic lateral sclerosis type 1; and distal hereditary motor neuronopathy type 7B. Orthologous to human DCTN1 (dynactin subunit 1).

Ensembl:

ensembl_id ENSDART00000176053

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069088 lncRNA downstream 1737 1055674 ~ 1061239 (-) True XLOC_034339
TCONS_00068645 lncRNA downstream 26187 914720 ~ 1036789 (-) False XLOC_034336
TCONS_00068646 lncRNA upstream 11232 1112303 ~ 1133023 (-) False XLOC_034341
TCONS_00067038 lncRNA upstream 22753 1123824 ~ 1136586 (-) True XLOC_034341
TCONS_00068647 lncRNA upstream 50139 1151210 ~ 1152972 (-) True XLOC_034343
TCONS_00068648 lncRNA upstream 66776 1167847 ~ 1168164 (-) True XLOC_034345
TCONS_00068649 lncRNA upstream 193741 1294812 ~ 1305257 (-) True XLOC_034347
TCONS_00067033 mRNA downstream 184503 864492 ~ 878473 (-) True XLOC_034335
TCONS_00067031 mRNA downstream 239481 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067030 mRNA downstream 239481 808916 ~ 823495 (-) False XLOC_034333
TCONS_00067032 mRNA downstream 239672 813055 ~ 823304 (-) True XLOC_034333
TCONS_00067029 mRNA downstream 258461 778297 ~ 804515 (-) True XLOC_034332
TCONS_00067039 mRNA upstream 38734 1139805 ~ 1148539 (-) True XLOC_034342
TCONS_00067040 mRNA upstream 56539 1157610 ~ 1163829 (-) True XLOC_034344
TCONS_00067042 mRNA upstream 229430 1330501 ~ 1348640 (-) True XLOC_034349
TCONS_00067043 mRNA upstream 397411 1498482 ~ 1504382 (-) True XLOC_034351
TCONS_00067044 mRNA upstream 771113 1872184 ~ 1879820 (-) True XLOC_034355
TCONS_00067027 other downstream 310875 743324 ~ 752101 (-) False XLOC_034331
TCONS_00067041 other upstream 102050 1203121 ~ 1203239 (-) True XLOC_034346
TCONS_00067051 other upstream 911730 2012801 ~ 2012916 (-) True XLOC_034359
TCONS_00067064 other upstream 1167105 2268176 ~ 2285368 (-) True XLOC_034367
TCONS_00067083 other upstream 2597719 3698790 ~ 3706778 (-) True XLOC_034388
TCONS_00067112 other upstream 2976663 4077734 ~ 4077871 (-) True XLOC_034401

Expression Profile

//