RNA id: XM_039812562.1


Basic Information

Item Value
RNA id XM_039812562.1
length 2123
RNA type mRNA
GC content 0.48
exon number 2
gene id foxi3b
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 445633 ~ 447959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCTTGACACAAAGCAAGGGCAAGCAGGCAAGAAAGGGTTGGAGAAGAGCAGTCCACAACTTGGAAGTGTAGAGACCATCATTTGGATCAGCTCACATTCAAAATACCTGCAAAGGTTTAAACAAGAAAAGGACTTTCGGGGGCAAAACAAAACCgctgcaaaaaacaaaaaacttgcaTAGAAAGGAAGGACAACTAAAGTCAAAGGGTTGAGAGGAGAATCTGAGAGGTGAGAAAAGAATTGACAATGTCTTCATTTGAGGCCCAGGGCCTGTCTCCTCCTCGGTGTGGCCCACAGTTCCCCAGCCTCGGCCAGGAGCCCCCTGAACTCAGCATGTACAGCGAATGTTACTACCCTCCCCCTTCACTGCCGAGTCCTCAGCGCACCGCTCCAACGTCCTACGACCTGAGCGACTACACCACCTCATCCCCAAACCCTTACCTCTGGTTCAACGGCTCCGGCATCAACACATCGCCGTACCTGTCTACTTCCGGCCCACCTGGTAACCCCGGTCCTCCCTTTGTTCCTCAGCACTACGGCATGCAGAGGCCTTACCTGGGTCCTGCTGGAGCTGGGGGTCCAGGAGGGGAGTTGAGCTGGTTCTCTCTGCCTTCACAGGAAGACCTGATGAAGCTCGTCAGGCCACCTTACTCCTACTCCGCTCTCATCGCCATGGCTATCCACGGAGCACCAGACAGGAGACTGACATTGAGTCAGATTTACCAGTACGTGGCTGACAACTTTCCTTTCTACAACAAGAGTAAAGCAGGCTGGCAGAATTCCATCAGACACAACCTGTCACTCAATGACTGCTTCAAAAAAGTCCCAAGAGATGAGGATGATCCAGGCAAGGGCAACTACTGGACACTTGACCCAAACTGTGAGAAGATGTTTGACAATGGAAACTTCCGACGCAAAAGGAAGAGAAAGTCTGATTTCCTGGCCGGTGGTGATGGCGGCTCAGGGGCTCCAGAGTCAGGTGACAGTGAGAGGGGCAGCCCCAAACACTCAAGTGCCCTTAACATCTCTCCCACGGCGGACAGGATCCCCTCCCCTTCATCATCCGGTCCAACACCTTGTCTTAGCAGCTTCTTATCCGAGATGTCTGGAGTGTCTGCAGCTAATGAGGTGGGAGCTGACGGGTTAAGCAGGCCACTGCACCTTTCTTTAGATGGGCCTCATAGACCCACGCAACCTGGAAGCTTTGGTAGCTACTCCCCCAACTCAGGTGGCCCAGAGTGGGTGCCACAAGTGGCAGCTGCCCCGGTTCTCTCCTCTTCACCCACCCACTCTTCCCTAGGTTACACTAGCCCCATTCTCAGCCAGTACAATGGGTCCAGTGGGCATTTCTACCCTACACTGAGCTCGACAGGAATCATCTATCATCGTGAGGGCACAGAGGTTTAATAGGATGTTAAGGGGGGAAAGTTTGGTTTAGAAAGACTCTTGACAGGACATTTTACTTGTCTGGTCCCTTATGTTTGAGTAAGGTTTGGTTGTGAAAGACaatacgcacacaaacacacacagtttgcGCTGACTTAGACTGTTAAGATCACTACAGCGTGCGAAAGCAGAGTAAAAAGGCTTTGATTCCCACAGTAAGTGCTGAGTCAGCAGCAATGCACTACGAGTGTCACTCGCTGAAACTACAGTCAGCCTTGCTATCAGATCCTCAGTCAGCTTTTTATTCAAACTAAAGCTAGTCTCTATCAGATCTGACTCATTATTAACAGATCCTGGATCTGATCTGCTGACATCAGGTCATTCCACACTGCTATCTGTGATTCTTTGATGGTATCACCCACACAACGCTCACACAGCACATTTAGAGGAGTAGTTAAATTACACCAGTCGACATAGTGTGTGTAGGTAAAAGGTAGACtttctgtcatgtttttttttgtttttgtagaaCTAAAGCTAAACAATCTGAACTTACAGTCTTGGATAGTAGTAGGCCTAATTGTActtaatataaaatgtaaatatgtcaATGTGTTGTGTAATgttatacatttatattgtcaGTTTGTTGGTGCAACTGTTTGTACAAAATTGATTCATAATGTATGGTACATGCTATATATGCTGTGTTTTTGATATGAATAAAAAGTTTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09401 FOXI; forkhead box protein I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137748 lncRNA downstream 57388 383449 ~ 388245 (-) True G102309
XR_005640572.1 lncRNA downstream 214177 230377 ~ 231456 (-) True LOC120567446
XR_005640573.1 lncRNA downstream 216194 227228 ~ 229439 (-) True LOC120567447
TU137700 lncRNA downstream 235191 210129 ~ 210442 (-) True G102273
TU137656 lncRNA downstream 378620 65635 ~ 67013 (-) False G102240
TU137794 lncRNA upstream 18456 466415 ~ 468450 (-) False tmsb2
TU137796 lncRNA upstream 40339 488298 ~ 488647 (-) True G102341
TU137798 lncRNA upstream 52509 500468 ~ 500682 (-) True G102343
TU137800 lncRNA upstream 110772 558731 ~ 559029 (-) True G102345
TU137801 lncRNA upstream 111902 559861 ~ 560236 (-) True G102346
XM_039813817.1 mRNA downstream 15778 423933 ~ 429855 (-) True LOC120567031
XM_039812960.1 mRNA downstream 109591 311932 ~ 336042 (-) False sh3tc2
XM_039812961.1 mRNA downstream 109591 311932 ~ 336042 (-) False sh3tc2
XM_039812962.1 mRNA downstream 109592 311932 ~ 336041 (-) False sh3tc2
XM_039812958.1 mRNA downstream 112366 311932 ~ 333267 (-) True sh3tc2
XM_039812560.1 mRNA upstream 4129 452088 ~ 456219 (-) False lcp2b
XM_039812561.1 mRNA upstream 4129 452088 ~ 456044 (-) True lcp2b
XM_039813891.1 mRNA upstream 10661 458620 ~ 460571 (-) True LOC120567087
XM_039813915.1 mRNA upstream 12964 460923 ~ 463027 (-) True LOC120567100
XM_039812667.1 mRNA upstream 18331 466290 ~ 468426 (-) True tmsb2
TU137703 other downstream 214189 220592 ~ 231444 (-) True G102276
TU137926 other upstream 391002 838961 ~ 841546 (-) False insb
XR_005640447.1 other upstream 1733084 2181043 ~ 2197917 (-) True sh2d1aa
XR_005640435.1 other upstream 2444460 2892419 ~ 2898545 (-) False pabir2
XR_005640589.1 other upstream 2448212 2896171 ~ 2896313 (-) True LOC120567496
TU138946 other upstream 3455032 3902991 ~ 3925309 (-) True G103268

Expression Profile