RNA id: XM_039812568.1



Basic Information


Item Value
RNA id XM_039812568.1
length 743
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC120566255
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18685048 ~ 18686432 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTATCCCTCACAGTTCTCCTGTCAACAAACTTCACTCTCTTTAATTCTAGCTAATCTCTCCAGTTGCACTTGTTACAGCTCCTTTCTACTACCTTCTCCACAAGTAACAAGATTTTTTCGACCTAAGACAACAATGTCCAGCTTCATGAAGGTCTTTCTGCTCCTGGCTGTCATGCTCTGCATGTCTAAAGCCCAACAGGGCCATCAATCAGGAAAGCAGTGTCTGTGTCAACGTGTCAATAATAGAATTGGCTCAAAGACTGACATAAAGGACATCCAGATCTACCCAGCAACCGTCTTCTGTAACAATGTGGAGATTGTTGTCACCAACAACAGCGGCCTTCGCTACTGCCTGGACCCCAAGCTGAGGGCAGTGCAAAAAGTCATGGCATCCATCATGAAACCAAAAACCTCCACTACAGCCAGACCAACTGAGACCACTTCCACCTCAGGCACCACCAACACAGCTCGCATCTGACTCTTTAGCTGCTTGGATCAATAAGAAGCTGATGATGACCTCCGACCCCAAACAAAGGCACCTTCAATTAATGTAGATGTGAAATGAATGAAACGTTTTGTCTATTTATCTTCTATTTATGCTGATGTGCACTTACAGCATATTTCCGTTCTATTTTATTTCTTCTAATCTGTTtttgtaaatatgtatatattatagaCCAAGTTTTCTGCATGTTggtcatttctttgtttttaataataaaaagaaatcaaggaaGCATTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142304 lncRNA downstream 133364 18550110 ~ 18551684 (-) True G105967
TU142250 lncRNA downstream 370647 18285958 ~ 18314401 (-) False reep2
TU142139 lncRNA downstream 616592 18067449 ~ 18068456 (-) False LOC120566360
TU142128 lncRNA downstream 649291 18035382 ~ 18035757 (-) True G105835
TU142127 lncRNA downstream 649800 18033407 ~ 18035248 (-) True G105834
TU142426 lncRNA upstream 23610 18710042 ~ 18729032 (-) True G106057
TU142435 lncRNA upstream 312108 18998540 ~ 18999875 (-) True G106066
TU142437 lncRNA upstream 315340 19001772 ~ 19002114 (-) True G106068
TU142448 lncRNA upstream 331320 19017752 ~ 19018811 (-) False rgs14b
TU142450 lncRNA upstream 360832 19047264 ~ 19047863 (-) True G106073
XM_039812569.1 mRNA downstream 5796 18677831 ~ 18679252 (-) True LOC120566256
XM_039813906.1 mRNA downstream 7682 18666064 ~ 18677366 (-) True LOC120567095
XM_039813051.1 mRNA downstream 26489 18642492 ~ 18658559 (-) True gfpt2
XM_039813239.1 mRNA downstream 44240 18622123 ~ 18640808 (-) False mapk9
XM_039813238.1 mRNA downstream 53118 18620133 ~ 18631930 (-) True mapk9
XM_039812570.1 mRNA upstream 3085 18689517 ~ 18691388 (-) False LOC120566257
XM_039812729.1 mRNA upstream 12992 18699424 ~ 18701803 (-) True si:dkeyp-72g9.4
XM_039813617.1 mRNA upstream 19663 18706095 ~ 18908295 (-) True LOC120566918
XM_039813621.1 mRNA upstream 20855 18707287 ~ 18864257 (-) False LOC120566918
XM_039813619.1 mRNA upstream 20855 18707287 ~ 18839898 (-) False LOC120566918
TU142254 other downstream 379353 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 693177 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 889825 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1107237 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 1533480 17142146 ~ 17151568 (-) False tmsb1
TU142417 other upstream 1356 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 529557 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 793586 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 1285983 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1544476 20230908 ~ 20233924 (-) True G106443

Expression Profile