RNA id: XM_039812584.1


Basic Information

Item Value
RNA id XM_039812584.1
length 2070
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120566266
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 12751195 ~ 12760002 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCGAATGTTATCATTGGATTGAATGGGCGTTATCAGTGGTTATCAGCCTCATAGAAATGGGTCAGTAGGGGCCTGCTGCGCCTACTGGTAGGCTCAGAAGGCTGTTATCATCCATTCGCATGGTTAATCACGGATAAATACACGAGAAGACTCCAGATCCAATCCCAGAACAATCCAGGTCGCCGCTAACCGGAAGTCTGCTGGATAACGGCATATGTATACACAGATGGCCCAGAGAGAGAGAACACAAATTAATGAAGAACAAAgggaaactttgaaaacattttttgagGATGGAATGACACGGGTTGGTTCCCCCCTCATATCAAGAGCTGCATCAGATACTGGTTTGGAAACCAGTGTCATAGAAaaCTGGATTGGTAACTACAAGAGGTCCTTTAAAGCTTGTTCTAAGCCAGGGCCgccaaaacaaaaactttacaCAAGAGAGCTGTCACCGTACAATCTTTTTTGTCGGGACATTCTCAAAAACAAAGGCACAATGAATGACATTAAGGGTAGGTGGTCCACATTGAGGGAAGATGTGAAGAAGCAGTATGTTCAGGAGGCAGCAGCACTGAAGGCACATGGGCAGTCACAGGACCTTAGCCCTGAGATGAGAGATCTTAAAATAAAAGGGCATCTGAAGAACCTGAAGTTAGAGGTGTCCAAGCTtgaggctctgggtgtggagacTGCCATTTTATCTTTTGACACTCAAAAGGCCAGCTTAGAGGTCTTTGAAACGAGTAGCAAGAAAGCCACTGTGTTCCTTGACTCAACGGACACAGTGAACAATTTTGCACTGCATTTCAAAGCCAGCTCCTCAGCCAGCTCCTCAGCCGCAGCACCTACTAAAGAGCCCATCAGTGTGCTTTTGAAAAAAGTACAAGATCTTTTCAACCAAAGATATAAGGAGGCCGGAGGTACTGGAAGGCTCCCCTACCTATCCATTTTAAATAACGATGATGTAACAATCAAAGTTGCTGGGCTGCCCATTGGACTTGACCTCAAGAAGCCCTCCTTCTACGGAAGAAACCAATTAGAGGCCATTTTGGCAGCTGCTGACCAAATTTCATTTGAAATAAATACAACACAATGCAACCCCACTGACATGGCAGAGGGAATGTCCGAGCACATGGACGCAGAAGGTGCACAGCAGATGGAAGGAGAGTCCTCAGAAGCCACTAATGTAGCCATTGTGATGACTGAAGATGAAGATGGAGGCAATTTGTGCTGTGTCTGCCGCATCCATTTTGACGACCAGAAGAAGAATGCTACAAAGAAGTGGCGTTCATGGTCTCAGTGCTCAGTGTGTCAATCATGGTCCCACACTGCCTGTGGTTTTAAAAGAAGCATGTGCCTTCATTGCCAGGGTCAACACACCATGCAAACACCCTGATTTCTAGCAGTCTATATCTAGGTCCATTGCCACCGAAAATTCcacggatgtccctcattttcagctgatgtccgtccccttcctgtttctttgtgttggcagtAGTTTTTGTgttctctgcagggtaaatccagacagctagctagactatctgtccaatctgagttttctgttgtaatATTTACGTACGAACGTACACAAGTTTGAGGTTTTGTGTTGATGGCCCCCACTGCAtccgtacaaacacacacactccgttTAAAAAGAACCCTGGAGTGTTTGGTCGGAAAGTCCAGCTTGAGTGAATTGAAAAAATCAGTGAAAGCTCATTTGAACTCTGGTGCATGTCTGTACGgattgtatatgtgtatacGGATTTGGCCGGcagccttgagtttgacacgtgattTAAAGCCTGTTAACATTTATTAGGTGCCTGTTCATCATTTTCATTAAAATAGACTCCTTGTGAATCTTGCCTCTACATGCCTTTGGATTAcacttatatattttaatttaccCTAGTTAAGATTCTTTGTACTTTATTGTTGTTTATTGGTTCCATCAATGTGGTCCCTTTCAAACCGTACAATGTGGGGAACATTTAAAGTTATATTGTAATGAATTGAGTATACCTGTTGGAAATAAAAGGTATCCTATTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140553 lncRNA downstream 476887 12273252 ~ 12274308 (-) True G104664
TU140548 lncRNA downstream 583042 12167833 ~ 12168153 (-) True G104659
TU140475 lncRNA downstream 800146 11945760 ~ 11951049 (-) True G104604
TU140432 lncRNA downstream 853521 11895623 ~ 11897674 (-) True G104571
TU140421 lncRNA downstream 892158 11852445 ~ 11859037 (-) False G104564
TU140641 lncRNA upstream 30466 12790468 ~ 12790707 (-) True G104733
TU140645 lncRNA upstream 172644 12932646 ~ 12932852 (-) True G104737
TU140657 lncRNA upstream 345613 13105615 ~ 13105883 (-) True G104749
TU140665 lncRNA upstream 488412 13248414 ~ 13248649 (-) True G104757
TU140671 lncRNA upstream 628945 13388947 ~ 13389163 (-) True G104763
XM_039813780.1 mRNA downstream 662290 12073595 ~ 12088905 (-) True nocta
XM_039813781.1 mRNA downstream 668582 12073595 ~ 12082613 (-) False nocta
XM_039813568.1 mRNA downstream 753952 11970243 ~ 11997243 (-) True LOC120566888
XM_039814274.1 mRNA downstream 824007 11900659 ~ 11927188 (-) False ccdc142
XM_039814212.1 mRNA upstream 981167 13741169 ~ 13766184 (-) False pcdh10b
XM_039814213.1 mRNA upstream 981167 13741169 ~ 13766184 (-) False pcdh10b
XM_039814211.1 mRNA upstream 981167 13741169 ~ 13766184 (-) True pcdh10b
XM_039813658.1 mRNA upstream 1338067 14098069 ~ 14119395 (-) True mlsl
XM_039813660.1 mRNA upstream 1338529 14098531 ~ 14119395 (-) False mlsl
TU140545 other downstream 607451 12142700 ~ 12143744 (-) True G104656
TU140484 other downstream 758517 11964979 ~ 11992678 (-) True G104610
TU140100 other downstream 3083244 9642552 ~ 9667951 (-) False LOC120566907
TU140082 other downstream 3112599 9637996 ~ 9638596 (-) True G104258
TU140040 other downstream 3181299 9564802 ~ 9569896 (-) False LOC120566283
TU140757 other upstream 1390490 14150492 ~ 14256041 (-) True G104837
TU140857 other upstream 1777099 14537101 ~ 14538469 (-) False uvssa
unassigned_transcript_470 other upstream 1944030 14704032 ~ 14704103 (-) True trnaa-ugc_8
TU140912 other upstream 1975289 14735291 ~ 14739480 (-) False LOC120567441
XR_005640448.1 other upstream 2329402 15089404 ~ 15107034 (-) False rnf44

Expression Profile