RNA id: XM_039812641.1


Basic Information

Item Value
RNA id XM_039812641.1
length 3650
RNA type mRNA
GC content 0.45
exon number 17
gene id tnip1
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15698337 ~ 15715960 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGATTGGTCCGCCGGGATGTCAATCAATCGCTGTTTACATCAAACGAGGTGGAAATTCCCGGGTTACAGCATAGACCAGTAGACCACTTCCGCAATAGATGTCTGGGCAGAGAGACGAGGCCACTGCGAGCTGAAAGTTCAGAGGACCATGTCTAGGAAGTGAGCGACGGCAATGGAAGGGAAAGGCCCGTATCGCATCTATGATCCAGGTGGGAGTGAGGTCAGGGCCAGGGAGGAGGCCGGAGGGGGAAGCAGCTATCGACAGCTACTGGAGGAGAACAGCATACTGCGGGAGCGAATGAAGGGACTTAAGAGTTTAGGTGATTTGCTGGAAGAGTCTCAGTCAGAGGCATCAAGGCTTCGGCAGCGAGTGGAGGAACTTGTGAGAGACAACGAGGCCCTTAAGTCCTCCAGCTTTGCCACCAGTCTGTGTATGGGAGGGCACATTCATGCTGAAACACAAAGTAGACCCTGTTTACACCCCACTGCAGAGCAGAAGGAGGAGCAAACAAGCTGTTTAGGGAAGACCCTTCAGCCTGAGAAGCCCAATGAGGCGTCAGTAGAGTTTGAGGTCGTGAATGTAGATGGGAAGACTTCAGAAGCCTTGACTGCCGGGTCGGTGGCAGCCGTAATCCCTGTCCTGCCTCAGGAGAACATCGAGCTAGCCAGCCAGCTGAAGAGACTAGAGAGCTCCTTCAGCATATTCGCAGAGGAGTCCAACCCGAACCAGCTGTTGGCTCACCTCGGTCGCATGGCTGTGGAGTTTCACCATCTTTCCTCCAAGGTCCAAAAGAACGAGCAGAGGACTTCCCTCCTACAGACTCTATGTGAGCAGCTCAGACAGGAGAACAATGAGCTTCGGAAGAAAATGGAAGAGGATCATCATATCAGGAATCGAGATTTGGAACAGCTGAGACAGGAGAATCAGAAACTTAAGGAGCTGGTCacgggagcagcagcagcagtagcagcagcgtCGTCTGCAGCGCCATCTGACACCGAAGCTCCGGAGGCCAAAGAGGAGCCTGTGAAGGAGGAATCAGCCGCTGTAAGACCCAAGATGGAGGCCACCACACCGCAGAAGAGTGGAAAAGCTGCAGAGAAAACCCCAACTAAACCTTGTGATGTAGAGGTGTATGAAAAGAAAATCAAGCTTTTGGAGAAGCAGAGAAAGGATGTACTGGAGGTGAACAAGCAGTGGGACATTCAGTGGAACTCCATGAAGTCACAGTTTGAACAGAAGATCACAGACCTCAGACAACGGCTGGCTGAGTCCCAGAAAACTGTGCTTGAGCTGGAGGCAGAGCGAGAGCAGAGGCAGCGCGACTAcgacaagaagctgctgctggcCAAGTCCAAGATTGAAAATGTACAGGGGGAGAAGGAGTGCCTCAACTCTGAGACCACTGAGCTGAAGCAGAAGATTCGCTACCTGCAAGATCAGCTGCTGCCCCTCAGCAAACAGAGGGAGTACCAGGAGAAGGAGATCCAACGCCTCAACAGAGCTTTAGAGGAAGCCTTAAACCTGCACACCCCTTCATCCTCCCAGCAACCACCTGGTCAGGGTAACTTTGCCGATGCAGCCAATAACCTGAAGAAACAGGAACTGCTCACTCAAATTGCTGTACTAAAGGAACAGgtAAAGATCTTTGAAGAGGACTTCAGAAAAGAGAGGAGTGACAGGGAGcgaatgaatgaggaaaaagAGGACTTGAGGCGGCAAGTTGAGAGACTCCAGGGTCAGATTACTAATTTGACCAATCAGCTTCATCAGGCGCAGAACGAGTGTCAGAGAGAACGTACGGAAAGATGTAAACTGGAGAGACTGCAGATGCAGCATCACAAACAGGGTTTTCCTTGGCAATCGTCATTCCCGCAGCCGAGAGGGGCCAGAGCAGTAGGAGAGAGTTCAAGACCACCACCAGAGAATGCAGATCAGTCCGCCGCAggggcggcagcagcagcagctgctgcagcagcagcagcaggatttggaaaaaggGACAGACAGAACATTGACCCTGGAAAGCACTAAGGCATCACTGTACCCACCAAATGGAGTCTGAGTAGTAGCATGAAATCAGTTTGTTTTTGAGTTGACAAGGTGTGATTTGATCTATAATTTTCCTACTGAACTGTAGATATCCTATTGTAATGTTGTTTATACTTGCGTTTTATAAGGCTATTTGTGAAACACTTCGCTATTCTGAATATATGTACATGAAatattatttagattttttttttttttttatcaggaaCTGAAGTCATTTGTTAAATGGGTTGGAATAATTAACATtgttcacttttatttttttttgtttccaggaAATATACCTATGTGCTTGTATCTCTGCAAGTGTGTAACAACTTGACACATACTTTGTTACTTGTAAGGTTACAGGAAGCCATTCCCCAATATGACTAAGACAACATATACTCATTCCAACAATGAATGAATATATAGTACATTGACTCATAGAATTTACAATGTGAATGTTGATTGATTTATGAAGATTGCTTCCGTACCATCGATGTTATAGAAATGTCCCATACATGTAACTGTTAAAAAGTGGTTGTTGGAAAAACAAATTTTGGGAAATGAATTTTGATGGTTTCATACCAAAAACATGATTGTGATTATTGATAATTTATTTATAACCTGCTGTTTTGATAGTTGCATTGACTAAGTGTAAATCATTGTCTTTAGTAATGCTGTTCTTTCTATGTTGTTAGTGTAATCCCAATATATTGGAGCTATTGACATTGTATGTTTGTATCAGACACAATACACAATGCACAGTACATACAcaaccttttttcccccccatgaTGATGGACCTAATCTCATTAAACACAACACTTCTACTTGACCACAATTGATTTGATGATTTGACCACTCATTCATAACTCATCTTACTGCATCCTGTACTAATGCCCACAGTTTAGCCCCAACATAGAGTATCCAGAAGTTACAGCACCAAAACCTTTAGGCAGCAGCGATGAAGGTCTTCCTCTTCATACATTCCTTGCTTATGGAGTTGTAATCAGTGCAACTACTACACCTAGTACTGCTCAAGCAACAGAAAGGGGATGATTGTAATCGGTATTTGCAGGCCCTAGATCTAGTGTTGCAGCAGTACAGCCGCTCCTCAGAGGAAAACCTCTGCTGGGATATCTGGCTTTGCGCTATGTGCCACTTCCAACAACCAGCAATCCAGGCCGGGCCATGCAGTCCCATGTACTGCTGTAACATTAAGTCAAGACCCCTGATAACAGACATAGGATCCACACCTCAAGATGtgtgttgccattttaaaaaggaagatCCGATCTCAAATCAAGCCATTGTTTTAACTGAATACCCATTAAATTTCCTTTAGTATAGTGTATGTCAGGTAGTCAGACGAAGGGCTTCAAAATGTGTGCAGATGAATTAGAAAAGGCTCCAGTTTATCAAACAGGTTACAGGGAACAAATTCCTGATGGGTGAGAGCTGAAACTAGGAGAATTGCACTTTGAAAGGTATGCTGTAATTACTGGCAGTTGTATTTTCTTGGTTTGTagccctttttcttttttgctgtaGGCAAAAGCACATGTGAGACTTTTTGTATTTGACTGGCTTAAtaaatctattctaaatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141177 lncRNA downstream 128257 15569818 ~ 15570080 (-) True G105149
TU141173 lncRNA downstream 169078 15527066 ~ 15529259 (-) True G105147
TU141175 lncRNA downstream 169078 15527066 ~ 15529259 (-) False G105147
TU141174 lncRNA downstream 169141 15527066 ~ 15529196 (-) False G105147
TU141137 lncRNA downstream 334396 15363636 ~ 15363941 (-) True G105113
TU141277 lncRNA upstream 38801 15751454 ~ 15755017 (-) True G105217
TU141278 lncRNA upstream 38801 15751454 ~ 15753024 (-) False G105217
TU141297 lncRNA upstream 115638 15828291 ~ 15828491 (-) True G105230
TU141313 lncRNA upstream 153414 15866067 ~ 15867855 (-) False hnrnph1
TU141314 lncRNA upstream 167710 15880363 ~ 15889068 (-) True G105241
XM_039813788.1 mRNA downstream 9519 15671635 ~ 15688818 (-) False dctn4
XM_039813787.1 mRNA downstream 9519 15671635 ~ 15688818 (-) True dctn4
XM_039813546.1 mRNA downstream 59977 15621014 ~ 15638360 (-) True LOC120566876
XM_039813271.1 mRNA downstream 79229 15598343 ~ 15619108 (-) True tspan17
XM_039812894.1 mRNA downstream 181577 15441419 ~ 15516760 (-) True ctnna1
XM_039812643.1 mRNA upstream 4588 15717241 ~ 15729319 (-) False anxa6
XM_039812642.1 mRNA upstream 4588 15717241 ~ 15729319 (-) True anxa6
XM_039812950.1 mRNA upstream 71149 15783802 ~ 15791552 (-) False rmnd5b
XM_039812949.1 mRNA upstream 71149 15783802 ~ 15791534 (-) True rmnd5b
XM_039812802.1 mRNA upstream 137841 15850494 ~ 15854036 (-) False hbegfa
XR_005640446.1 other downstream 79229 15604604 ~ 15619108 (-) False tspan17
TU141106 other downstream 563601 15133530 ~ 15134736 (-) True G105086
XR_005640448.1 other downstream 591303 15089404 ~ 15107034 (-) False rnf44
TU140912 other downstream 958857 14735291 ~ 14739480 (-) False LOC120567441
unassigned_transcript_470 other downstream 994234 14704032 ~ 14704103 (-) True trnaa-ugc_8
TU141311 other upstream 153414 15866067 ~ 15867855 (-) False hnrnph1
XR_005640433.1 other upstream 880255 16592908 ~ 16674855 (-) False gria3b
TU141625 other upstream 1245009 16957662 ~ 16963474 (-) False rab9b
TU141756 other upstream 1429493 17142146 ~ 17151568 (-) False tmsb1
XR_005640507.1 other upstream 1809488 17522141 ~ 17577811 (-) False nexmifb

Expression Profile