RNA id: XM_039812660.1


Basic Information

Item Value
RNA id XM_039812660.1
length 4738
RNA type mRNA
GC content 0.42
exon number 15
gene id slc43a1a
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21314294 ~ 21348934 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGACCTGAAAATAAAAGAACAGCAGCGATGGGGCCCTCTCTCCTCCAGGCCTACAGGAGACGCTGGTGGATGGCGGTGACGGCGGTGATTGAAAACCTGCTGTGTTCGGCTGTGCTGCTGGGCTGGGGTTCCCTGCTCATCATGCTGAAAAGGGAAGGCTTCTACGCCTACTTGTGCTCAGTGAATGAGTCCGTGGTTGTGTCATTGGGTAACTCCTCCAGCAGTGAGGTGGAGGAGTGGCTCAGCTGCGTGGACCAGGAGGAGATGCTGAATCTGGGCTTCACCATCGGGTCCTTTTTGCTCAGTGCCACCACCCTGCCTCTTGGAATCCTGATGGACAGGTTTGGACCACGCCTCATTCGCCTGATGGGCAGTTCGTGTTTCGGTCTGTCCTGTGTTATGATGGCCGCGTCTGCCTACAACCCTCATGttCTGTCACCGCTCATTTTCTTGGCTCTCTCCATGAACGGCTTTGGAGGCATCTGCTTGACCTTTACTTCACTCACGCTCCCCAACATGTTTGGTGCTCTGAGCTCCACCGTCATGTCTCTGATGATTGGCTCCTACGCTTCCTCTGCTGTCACCTTCCCTGGAGTCAAGCTGATCTACGATGCAGGTGTGTCCTTCCAGGTGATCATGTGGATGTGGGCAGGTCTTGCTGCCTGTGTCTTTTTAAACTGTCTTCTCAACTGGCCCACAGAAGGCTTCCCAACACCTGACGAGGTAGACTACAGTAAGATCCTCACGATGCAAGAGCTGCCTTCATCTGATCAGAAGGCTGTTGGAGAAAGACTTAGCCAGAAAAATGGAGACATCCGACACTCCACAGAGAAACTTTCTAGTGAATCTGATGCTGCACCCAATGTTGCTCCCTTTCGTCGGTCTGTGTTCTCTCCCATCTTCCTGTGGAGTCTGGTTACAATGGGGATGACCCAGTTGAGGATCATCTTCTTCATGGGGGCGATGAACAAGATGCTGGAGTTTATGGTCACCCACGGTGAAGAGTATCcATCTGAGCAGCAGGTGCTTGAGACAGAGGAGAAAGTGAGTTTCTACTCGTCCATCTTCGGCACGCTGCAGTTGCTGTGCCTCGCTACGTGTCCTCTGATTGGTTACATAATGGACTGGAAGATGAAGGAGTGTGAAGAGGAGAAGACCGTCCCCCCAGGCACAGAGCAGAGCCCTATCAGACAGACCAGTGTTCCCGTGAGAGACCGTAAGATCCAGAAAGTGACCAATGCCATGAGGGCCTTCATTCTCACCAACCTGATGCTGCTCGCTTTCGGATGCTGCAGCCTCATAGACAACCTGCCTCTACAGATCTTAACCTTCATCCTCCACACTATGGTCCGAGGCTTCATCCACTCCTGCTGCGGAGGCCTTTATGCTGCTGTCTACCCGTCCAACCACTTTGGCACTCTGACAGGCCTCCAGTCCATGATCAGCGCTGTGATCGCTCTGCTGCAGCAGCCGCTCTTCATCGTCATGGTCGGAACCCTGAACGGAGACCCCTACTGGATCAACCTCGGACTGCTAATATTCTCATTGGCTGGCTTCCTGTTGCCGGGTTACCTGTTGTACCACCGCAGACAGCTGCTGAGGGAAAAAGAAGCCAGAGACAAGCGAGTGGCCGAACAGGAGATGCAGGCGCTCAACAACACCGAGGCCAATGGCTACAAACCTCATAGCAACGGCCTCGCTGCTGTGGAGGCTTAGAGCAACACAGAGCGGAGGGTTGGGGGGAATTGTAGGATTTATGTGCCTTTTAAAATGAGCACCAGCAATCGCCTCATccatatatattttgttttgatatttccagtgtttttgtttttggtcaTTGCTGGTGCACATTTTGCTCACAACAAACAATACCACAGAGCAAATAGGATTCCTCCTGTTTTGTTATGACTAAGAGTTAGACTTTAAGTTCCCTGTGATTTCGTGGAGATGTGTCATCATCATTTGTTGCTGTTTATTTATTCTGGTTTAGTGTCAAAGAGCCAATTTAGTGTGATTTAAAGCCATAGATTTCACGCACACGCAaaaagacacatgcacacaccctgGTATGGCCTGCGTGTCAGACTGCGGATGTCACTGTACTTGAAATACTGTTGAATAGTTTTCAAAGACTTCTGATAATCATCACAATCCTTGCTAACACCAAAGAACAGCTTAAAGATATTAGGAAAGTTACACTTTCTACTTCAGTATTGTTTTAAAAGTGTGCTTAATGAAACACACTTTAGGTATATTGTGCTGTTTCCACTGTTTTATACTCTAACACACTTTAAAAGCATACAGGCAATcaaagaaaatgtaaactatCTAAATACCAGACCTACGAATAGAGAAGCATTTGGGTTATTTTCAGAGCCCAGTTATTcaatcaaacacacaaacacacacacacacacacgtacatgcgCAGATAGGCTGGTTGTAGAGACACCATATCTACCTCCTCTGTTTTTACTGTCTATCTGCAGCCGACTACTATGTCAGTCCAATTTCTTTTCCACATTAGGAACTATTCATCCTTTCATTGTCAAACACCCAAAATAACTAATTTAATCAGTACAGAATCCCTCCTTGTGCATTTGTGTTCTTTAGAGGTATTGCTGACTCAGCTCTTgaatttctggattttttttacatgttaagtaaaacatttttatgGAAAATTCacaaggaaaaatatgactGACTTTTACAATTCTGACACACAGTGTGTGTCAATGTTATGAATCACTTTGTACTGCTTTATGCACAGAAATGAACTAGTGTGtgtataaaatatgtatttaagtGTCTTTTTATACTCTAGCTGCAGTAGCATTAAAAAGGGAAGTGTTTGTTTCagttttagttattttgtagtgtGCTAAATAATGAATGAAGCTCAGATGATTTTCTGTGTATTCTGCTTTTgcctttttgatttttttgtcatgTATTGATTTTGGAGCaaacaaaccatcaacattgttttttgtaaatagAACAGAGGtgtgttatgtattttattacattttctgctactatatatgtgtgtgtacggtaTGTTCACTGATGGCTGACGTTAAACTTGTTATTTTAATGTGATTTTTCTGCTTGAATGATCAAAGTCACATTCAAAAGACATTGTTTCAACCAAAACAGAAAGatttacatttttctaaagtGACAACAATACGTGTCTATCATGTACATGCTAGTTCTGCTCACAGCAACAGTATCATGTTAGATACTAGATTTATTGAATCGGATGTAGCCTTTCATTTCACCCTTTTTGACTCAATCCATTTCAGTGTCAAGACAGCTTTAGTAGAGTTCTCCTTTCTTGTCTGATGCATTCCTTCCTGCTCTCTAAATGTGTTCAGCTGCTTGAGTCTTTGCTGATTCTGAGTTGTGTTTCAACTCTGTGCCTTTGCTGCCATATTGGTTTTATTGCAATAGATATGGATGTTAGATTAAAGGGGAAATACACCCATTTTCAGTCATACAAGTTAGTCTAAGACAGTCCAAAAATAATAGCAAACATGAACAAATCTCTCCCATATCCAAAAACTAGAGTGCTAAAACTCAAATCTGTGATGTCATTAGGATAGTGTGCAAGGCACTCATGAAGGACATTCTGAGTTTTGTTTGAATCCTGTGCCTTTACTGCCATTTTGGCTTTATTGCAATAGATATGAATTTAAGGGATTAAAAGGGAACTATGCCCATTTTCAAAATTCATACGTTATTCCTATAGCCTAAGGCAGTCCAACAATATTAGTAAGTTCCCAAATCCAAAAACTAGAGTTCTAAAAAAGAACTGCTCCATGGACAATTGGGAAATATGGTACAGATGACACTGAGAGCCTCAGGGGAATGTTCTGAGTAAATGGtcacattttctgttttagatcggAGTACACTACAATAGAATAAAACTTATTTGGGTACAAAGAAGATAAAAATCAATATCCCATTTATTGTCTATGGAGCAGCTCCAGACTTGAAATACTTGACGACATCACACATTAGAGACTGACTTATGTGGTTTCTTTGAGAGAAAGTAGCCCatgttcacaaatattgattgaaCTTAAATAGGCCATGGAAATGCCATAGCGGAATTCCTAATTTAGGTGATGTTCCCCTTGATGTTCTGCCAAACATCTTTCTCTGTAAACCAAAGCTGTGTGTACTGACTGACTGTAAGCTAATCGAAGGCACTTTCCTAGGGAGCAAAATAACAGGAATGCCTTACAACACCATACAACAACATTGATGGTAATTTCTGAGGCTGTATGTTGTGTTGTTTAAATACTGTTGAGTGAATTACAATCAGTGTTGGTGAGGTTTTCCAGTTTGACATGTCACTACTTTCCTCTTATATAGTGTTTTGTAATGTTTAAAAACATATGTACCAGCAACGACTACCCGACCCCTTTGTACATATGTACTCTTAAAAGTCCTTAAGAACTTAGTGGTTGTAAGACCTGACTCCCTTGTGTTCATGCTTTTGTAATTGGGATTTACAGTAGTCGTTGATTAACACCTCTGACAGTCTCTAACATAAAAATCCTTTGCTTTGTCTGTATTTTAAGTGGCTTATCAAATCTTTTCTCACCCTTGGGGTTGAAGTTTTGGTATGTCCTGCTAAATGTAGGTCTTTCTTTCCTGCCTTCAAAATCAGTATATCCAGCACGTGCatttgataaacaaataaatgaataaagtctg

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143444 lncRNA downstream 167 21312363 ~ 21314127 (-) True G106802
TU143431 lncRNA downstream 26513 21286314 ~ 21287781 (-) True G106793
TU143417 lncRNA downstream 57647 21252905 ~ 21256647 (-) True G106784
TU143360 lncRNA downstream 131594 21179985 ~ 21182700 (-) False LOC120566634
XR_005640437.1 lncRNA downstream 150231 21149902 ~ 21164063 (-) False LOC120566633
TU143459 lncRNA upstream 11382 21360316 ~ 21408289 (-) True G106813
TU143475 lncRNA upstream 40678 21389612 ~ 21401183 (-) False G106825
TU143476 lncRNA upstream 45528 21394462 ~ 21401183 (-) True G106825
TU143506 lncRNA upstream 91890 21440824 ~ 21443089 (-) True G106848
TU143511 lncRNA upstream 94463 21443397 ~ 21446726 (-) True G106852
XM_039812663.1 mRNA downstream 6159 21302070 ~ 21308135 (-) True tmx2a
XM_039812670.1 mRNA downstream 75771 21233306 ~ 21238523 (-) True smtnl1
XM_039814155.1 mRNA downstream 83919 21220217 ~ 21230375 (-) True LOC120567254
XM_039814154.1 mRNA downstream 84467 21220217 ~ 21229827 (-) False LOC120567254
XM_039813198.1 mRNA downstream 94865 21196765 ~ 21219429 (-) False LOC120566637
XM_039812662.1 mRNA upstream 18154 21367088 ~ 21381178 (-) True clcf1
XM_039813290.1 mRNA upstream 67760 21416694 ~ 21423613 (-) False zgc:113229
XM_039813289.1 mRNA upstream 67760 21416694 ~ 21423613 (-) True zgc:113229
XM_039813291.1 mRNA upstream 67760 21416694 ~ 21423551 (-) False zgc:113229
XM_039813288.1 mRNA upstream 80560 21429494 ~ 21438163 (-) False tbc1d10c
TU143328 other downstream 183324 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 1080370 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1333161 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1831736 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 2095150 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 441319 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 770751 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1342226 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1642053 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1780775 23129709 ~ 23134785 (-) True G107284

Expression Profile