RNA id: XM_039812666.1


Basic Information

Item Value
RNA id XM_039812666.1
length 2241
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC120566307
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 2353559 ~ 2355799 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTGAGCTGCTCCCTTCCTTCAGTAGCAATAGAGGGGTTCAGCAGCCAGCATGGCCacagctgcctccagcccctacACCCTGCTCAGCTCCAGTCCCATGATCCACCCGGACAGCCAGGCCATGCAGCCTGCTAGCCCCTACAGAGGCCACCAGAAACTTCTCCAAAGTGACTACCTGCAGAGCGTCCAGAGCAACGGACACCCTCTCGGGCACCAGTGGGCGAGCAGTCTGTCGGAGGGCAGCCCCTGGTCGGCCTCCATggagcagcaggacgtaaaACCCGGCCGAGAGGACCTGCAGCTTGGCATCATCCATCATCGCTCCTCGCACGTAGCGCATCACTCCCCTCATCACAACAACCATGGCAACCACCCCGGAGCCTGGGGAACTCCGGTGTCCCACAACTCCTCCATCACCAGCGGGCAGCAGATTAACATCTACTCGCAGACGGGCTTCAATGTCAACGGCATGCTGGACCACGGTGGCCTCACACCTCCACCCAACCCGCAGGGCCAAGGCATGCACCCGGGCCTCAGGGACACGCTCAGCCCCGAGCACAGCGACCTCGGCGGCCACCACTGCCACGACCACTCCGACGAGGAGACGCCGACTTCGGACGAGCTGGAGCACTTTGCCAAGCAGTTCAAACAGCGGAGGATCAAGCTGGGCTTTACGCAGGCGGACGTGGGTTTGGCTCTGGGCACGCTGTACGGGAACGTCTTTTCCCAAACCACCATCTGCAGGTTCGAGGCTCTGCAGCTGAGCTTTAAAAACATGTGCAAACTAAAGCCGCTGCTGAACAAGTGGCTGGAGGAGGCAGACTCGTCCACGGGCAGCGCTAGCAGTATAGACAAGATAGCAGCtcaggggaggaagaggaagaagaggacgtCCATCGAGGTCAGCGTCAAGGGGGTTCTGGAGACGCACTTTCTCAAGTGTCCCAAACCCTCCGCGCCGGAGATCACCTCGCTGGCGGACTCGCTGCAGCTGGAGAAGGAGGTGGTGCGCGTGTGGTTCTGCAACCGGAGGCAGAAGGAGAAGCGCATGACGCCGCCGGGAGAGCCGCCGCCGCACGAGGGACCCTATTCTCACAGCGGGAGCGCGGGAGACGCCTCCTCGTGCCACGATCTCTGACCGAAGCACCGGGAGGAATCCCCCGGCATGCACAGACTCTCGAGCGCAGGGGCGCGCGGTGGCACCTCCAAGCCCCCCGTGGCTGTCCCGGACTCAGACAGACTCCTCCAGCTGTCTCCAGCactgaaacacaacaacaacaacaacaacaacaacaacaacaacaacaacagcaagaaCAGAGATCTACCTGTTCAGCCTTCGTCATTTTCTAACTGTCATGAGGGCATTATTCTAGAGCGGCATATCAGACGTCACATTTCAGATTACCTACCTTTGGAGCCCGGTCAAATTATTTTCTACATCACGGATATAAATACAAAATGTGCCTAATAACCTGCCAGCGCCTTTGGTTTGTGTCACCGTTTCTCATCAGCTCAATAATAATGCTATTTGGCGGACTGGTGTTCCATTTGTTTGGGTTTTTCTCACACACGTTCTGTTGAAGTGAAACCAGTAATTCTATCACAGTTTCTTAATTAATTTGTTGCAGCACCAGAGGCCGTTTTACAGTCCACCTCATGCTTCCCTCGGGCATATACCATGCTTTAATTCTCTCCATATTTACTCATTATTTTGTAACATACTCGTAGCAGAtctgtaattgttttttttttttgcatatgcAAATATAGGCCCTCATTCCAGTTGTAGAGGTATTGCTACCAACAAAATAGCACTTGGaggttgttgttattttttattttattttttaatgaaattcctCCCTTATGGCCTGTAGCTTATGAAGCCACACACAGTTACAGCTATTTATAAATTCTTTTATTTGATTTCAATCATCTTCGACCATATAAACTGTGTGGACTCTGAAACAGAGCCgagaatagagagagaaaggggttGATGACGCTATACACCTGCCTATAAGTTTATTGTACGTTCAGTATCAAAATTTTATAATCTTAAATACTCCTGTTATTGGTTTATTTCCTAAGTATTTTTTCGAATATTGTACAGTTTTATATATTACCCTTTTGAAGTCATTAATTTAAACAAATGCTCCTAGTTATTCATGCACTTAATTAGcgatgtaaacacacacacacacacacacacacacacacacacacacaatatttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640479.1 lncRNA downstream 11654 2341197 ~ 2341905 (-) True LOC120566871
TU138287 lncRNA downstream 42737 2308466 ~ 2310822 (-) True G102754
TU138282 lncRNA downstream 53145 2299673 ~ 2300414 (-) True G102749
TU138281 lncRNA downstream 54338 2298788 ~ 2299221 (-) True G102748
TU138273 lncRNA downstream 132113 2219576 ~ 2221446 (-) True G102741
TU138310 lncRNA upstream 28119 2383918 ~ 2384235 (-) True G102774
TU138312 lncRNA upstream 28508 2384307 ~ 2384671 (-) True G102776
TU138325 lncRNA upstream 75236 2431035 ~ 2431275 (-) True G102788
TU138356 lncRNA upstream 102269 2458068 ~ 2533539 (-) True G102816
TU138369 lncRNA upstream 144857 2500656 ~ 2501395 (-) True G102822
XM_039813306.1 mRNA downstream 55437 2221502 ~ 2298122 (-) False si:ch211-26b3.4
XM_039813305.1 mRNA downstream 55925 2221502 ~ 2297634 (-) True si:ch211-26b3.4
XM_039813308.1 mRNA downstream 56142 2221502 ~ 2297417 (-) False si:ch211-26b3.4
XM_039813309.1 mRNA downstream 56142 2221502 ~ 2297417 (-) False si:ch211-26b3.4
XM_039813307.1 mRNA downstream 56142 2221502 ~ 2297417 (-) False si:ch211-26b3.4
XM_039814486.1 mRNA upstream 44473 2400272 ~ 2405790 (-) True LOC120567491
XM_039814485.1 mRNA upstream 50321 2406120 ~ 2419903 (-) False LOC120567490
XM_039814484.1 mRNA upstream 50321 2406120 ~ 2419902 (-) True LOC120567490
XM_039812676.1 mRNA upstream 81802 2437601 ~ 2439326 (-) True si:dkey-237j10.2
XM_039813559.1 mRNA upstream 85849 2441648 ~ 2456243 (-) True sh3bgrl
XR_005640447.1 other downstream 155642 2181043 ~ 2197917 (-) True sh2d1aa
TU137926 other downstream 1512013 838961 ~ 841546 (-) False insb
TU137703 other downstream 2122115 220592 ~ 231444 (-) True G102276
XR_005640435.1 other upstream 536620 2892419 ~ 2898545 (-) False pabir2
XR_005640589.1 other upstream 540372 2896171 ~ 2896313 (-) True LOC120567496
TU138946 other upstream 1547192 3902991 ~ 3925309 (-) True G103268
TU138957 other upstream 1573255 3929054 ~ 3933202 (-) False smim19
TU139113 other upstream 1964910 4320709 ~ 4399990 (-) False LOC120567378

Expression Profile