RNA id: XM_039812670.1


Basic Information

Item Value
RNA id XM_039812670.1
length 2285
RNA type mRNA
GC content 0.45
exon number 5
gene id smtnl1
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21233306 ~ 21238523 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGACATCATGTTGTTCAAAAGGTCAGATAAAGAAGCATAGGCATCCTCACAAAGCAGAAGGTGGGGGTATCTGGTGAAGGGGGTGAAGGCGGATATCcacaaaccaacacacacatccCGAACACAGGGGCAGTGCTGACAGAGACTGGGAGAAAAAGGGAGACAGGGAAAGCAAAGCAGGGTAGTGaaaggagagagtgagacatTGAGCAGGCTTCCTGTGAAGAGGATTCACCTCTGACTGAATGAAAACGTTCTAAGAAAGATAGAAGTGATCATTTTAGAGTCCTGGGGCGTTAGTTGAAAAGAAAGTCTGATTTGACCTGCGATCCAGTGGATAAACAAACATTTCTGGACATCATGGACGGAGAATCGCCCAACCAGATGACATCTGGGTCTACAGAGACGACAAGCCACACtgacaccaacaacaacaacaacagcaaccagACAGCTGAGTCAGAGCTCGAGGAGAGTAAAGACCCAGGGAGAGagcttccagcaggggagaccgTGGAAGGTCAGGGGGTAATGGAAGTTGGGGAGAAGGGGGAGGAGGATTCAGCACCAGAGCAGGCTGGAGAAGGGGAGGAAAGTGCTGGAGATACAGACAAGTCCCATACTCCTCCATTAAAACATGTTGACGGTGACGCTGAAGAAGCTGGACACGGCAAAGACAAAGCTTCCACTGATGTCGACGTGAAGGATCCTAAGCCGACAAGTGGAGAAAAAgatggggagggagagaggaaggaagacaAGAAAGGTGGGCAGGTGGAAGAGGAGAATAGTTGTGAGACTGGGAGAGATGGCAAGGAGATTATGGACAAAatcaaagagaaaaagaagagcaaAACAGAGGAAAAGGCAAAAGGAGCAGAAAAAGACGTGAATGAAAAAGTAGCAAAAGGGgcagagaagaaaaaacaagTTGAGGAAGTGAATGTTGAAaccaaagacaaacacaagctTAAGGAGGCAGAAAAGCAAGGGAAACCCAAAAGAAAGAGTGGtcctccctcttcttctctctcccgACCAAGACCCTCTGCACGCTCTATTAGAGCAGCTGCTAAAAACGACATCATTGCCAAGTTCCAGCAAGGTGCACCAGAGACACCAACACCCCGCAACTTCAAAATTCAGAGGTCATCTACGGCTGTGGCAACAGGAGCTTCAATCAAACAGAAGATGCTTCAGTGGTGTCGCAACAAGACTCGCAACTATGAGGGTGTCAACATAGAAAACTTCTCCTCATCCTGGTGTGATGGGCTGGCATTCTGTGCTCTGATCCATCGTTTCTTTCCTGATGCTTTTGACTACAGCTCCCTGAATCcaaatgaaagggagaaaaactTCACTCTGGCCTTCCAGACTGCAGAGTCCATGGCCGactgctgccctctgctggaaGTGGGTGACATGATCATGATGGGCAAAAACCCGGaccccatgtgtgtgtttacatacgTCCAGTCCCTCTGCCACAGCCTCTCCaaaatagagaaagagaggaaggacaaagaaaaggaggaaaaagACAAGGCTGGTAAtgagggagaggagaaagacAAAGGAGAGGAATCACTGAAGAAGGACGGGGGAGAGTCTTCTGAGAACGGGACGATGGAAAGCCAagaagagaaacagggagaTGTTACAGAGGTTGCTGATGAGGAAGAAAATGCACCAAACAGCTGTGAGACGGAGGGAGATGGGGGAGCGTTAGTCCAGGCCGAGTCCTAGAAAAATACTGACGGCAAACAGAAATACTGAAAAGACCAAAAGGATTGTTGATGGTTGCGGTACTACAATGAACTAAGTCTTAGTTTGGTGTTGGATTAACTACTGGCAATATGATATAATGTTTGAAGGTGTatatgctgtgtttttgttgcatatgtttgttttgagcacataaagaaagaaatgttcAGTTCCTTAATTTGCTGTGTGTTTATAGATAcaaatatgtataatatgtatAATATGATGGACTTGTAAATCTCTGTGTTGAAGGGATATGTGATACTCAGCCAAGATGAATGGGAATGAATTACGACCACAATGCGATGATGATGTATTCACAATGGAAACAGACTGTCTTTTTCGCCAGAGAGACAAATTATATTTCATTCTATAGAGACGTCTAAAGTAGTATAATATAATGAAAGTATGTGAGAAATCAAGAAATGTATAAGGTTGTGAATTACTGTATACATGAGACATTTGccttaaaaaaattatgaacatatttaaaatgggtaaacaacacttcattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143360 lncRNA downstream 50606 21179985 ~ 21182700 (-) False LOC120566634
XR_005640437.1 lncRNA downstream 69243 21149902 ~ 21164063 (-) False LOC120566633
XR_005640436.1 lncRNA downstream 69243 21160341 ~ 21164063 (-) True LOC120566633
TU143341 lncRNA downstream 128332 21101252 ~ 21104974 (-) False LOC120566885
XR_005640391.1 lncRNA downstream 161750 21070626 ~ 21071556 (-) False LOC120566356
TU143417 lncRNA upstream 14382 21252905 ~ 21256647 (-) True G106784
TU143431 lncRNA upstream 47791 21286314 ~ 21287781 (-) True G106793
TU143444 lncRNA upstream 73840 21312363 ~ 21314127 (-) True G106802
TU143459 lncRNA upstream 121793 21360316 ~ 21408289 (-) True G106813
TU143475 lncRNA upstream 151089 21389612 ~ 21401183 (-) False G106825
XM_039814155.1 mRNA downstream 2931 21220217 ~ 21230375 (-) True LOC120567254
XM_039814154.1 mRNA downstream 3479 21220217 ~ 21229827 (-) False LOC120567254
XM_039813192.1 mRNA downstream 13875 21196765 ~ 21219431 (-) True LOC120566637
XM_039813193.1 mRNA downstream 13876 21196765 ~ 21219430 (-) False LOC120566637
XM_039813194.1 mRNA downstream 13876 21196765 ~ 21219430 (-) False LOC120566637
XM_039812663.1 mRNA upstream 63547 21302070 ~ 21308135 (-) True tmx2a
XM_039812660.1 mRNA upstream 75771 21314294 ~ 21348934 (-) False slc43a1a
XM_039812661.1 mRNA upstream 75771 21314294 ~ 21347428 (-) True slc43a1a
XM_039812659.1 mRNA upstream 75771 21314294 ~ 21340023 (-) False slc43a1a
XM_039812662.1 mRNA upstream 128565 21367088 ~ 21381178 (-) True clcf1
TU143328 other downstream 102336 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 999382 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1252173 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1750748 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 2014162 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 551730 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 881162 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1452637 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1752464 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1891186 23129709 ~ 23134785 (-) True G107284

Expression Profile