RNA id: XM_039812697.1


Basic Information

Item Value
RNA id XM_039812697.1
length 1990
RNA type mRNA
GC content 0.42
exon number 12
gene id tdo2a
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 29867532 ~ 29874648 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCCTCAAGAGTGATTGGATGGGGTGAGTCTTTAAAAGTCTGGATTGCGTTGAAGACAATTTTAGTTAATGTTGTCAAGGAAGAAGAACACATCTGTGCCACAACTGAAGTCATGAGTGGATGTCCATACTTTGAGAAGAGGCATTTGTTATTCAAAAACAAGCCTCCCAAAACAGAGGAAGATGAGGATGCCTCTCAGGCAGGCGTTAACAAGGCCAGTAAAGGAGGAATCATCTATGGAGACTACCTGCAGCTCGACAAAATCGTCTCAGCCCAGGTGTTGCAGAGTGAAGTAAAGGGCAATAAAATCCATGATGAGCACCTCTTCATCGTCACCCATCAAGcATATGAACTGTGGTTCAAACAGATTTTGTTTGAACTTGATTCGGTGCGACATCTCTTCATCAGTGGACATgTCAGAGATGAACGCAACATGCTGAAAGTCAACAATCGCATCCACAGGATTGTGATGATCTTTAAGCTGTTGGTCGACCAGTTTGCGGTTTTGGAAACAATGACAGCCTTGGACTTTTTTGACTTTAGgGAATACCTGGCTCCAGCCTCTGGATTCCAAAGCCTTCAGTTTCGGATCTTGGAGAACAAAATTGGGGTCCCGGACAACCTGAGGGTTCCATACAACAGACGCCATTACAGGGACAATTTCAAGGGTCATGAGAGTGAGATGCTGCTCGCCACAGAACAGGAGCCGACACTTTTAAAACTAGTCGAGGAGTGGCTGGAGAGAACTCCTGGCTTGGAGGTGGACGGATTCAATTTCTGGGAAAGGCTGGAAATCAATATTTTTGATGGGCTGAAACTGGAAAAGGAGAAAATCGAGaaaatggaaGATTCTGAGGACAAGGAAGAAATGATGGCTGAACTGGTCAAACAGAAAGAGCTGTTTACGTCACTCTTTGATGAAAAGCGACATGACCATCTCCTTAGCAAAGGCGAGAGGCGGCTCTCTTACAAGGCTCTCCAAGGTGCCCTGATGATCAACTTCTACAGGGAAGAGCCGAGGTTCCAGGTTCCTTTCCAACTGCTCACATCTCTCATGGATATTGACACCCTCATGACAAAATGGCGATacAATCACGTATGCATGGTGCATCGTATGATTGGCAGCAAAGCCGGCACAGGGGGTTCATCTGGCTACCACTACCTGAGATCTACTGTCAGTGACCGCTACAAAGTGTTTGTGGATCTGTTCAATCTGGCAACGTTCCTGGTGCCTCGCCACTGGGTGCCCAAGCTAAATCCCAACATTCACACGTTCCTCTACATGGCCGAATGTTGCGACAGCTCCTACTGCAGCAGTGAAGACTCAGACTAGAGGAATCAATCCCAGTCGTCTGTCCTGGCTTACATTTTCACCGTAACTGACCTCAAAACAGTAGATCCGTTGCACAGCTGAAAGGTTTTAGTAAGAGGTGCATACAGTaagatgatgaagaaaactcttaaaacacaggaaaatggaatttttgtttgtttgttttgtttttttttacagttgaaaAAAGAGTGAAGCATGGCACAGGGAGGGGTCATTTAACATAGGTGACAATCTAAACCACCAAAATATCCATTAGGGAGAGACACTTGATACCATGATAGTATTATTGGTTGGgatttaaataattttagtatttggattgtattttttaatgtaaaatatatatatataatttttttttcatctcattGTGACACTAAAAGCATGCCAAATATCCTACACTTATGTTAACAAAGAACAGTAACAGAATTTAGCTTATTAGTTACATCAGACTGCAGCACCAAGGTTTATACGCCAGAATCTTGTGACGCAGTGTCTGACCCTGAACAATTCAAATGGCCAAATTAGACAATTTTGCTCTAATTTCTAATCTTAACCGGTGACAAAGTATAGCAGATGGCTACTTGATAAAATTtgctttgatgtttttttttcagtacaATTATGTAAATTCCCTGTGACTGACCTGAAAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0019441 tryptophan catabolic process to kynurenine biological_process
GO:0004833 tryptophan 2,3-dioxygenase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00453 TDO2, kynA; tryptophan 2,3-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145917 lncRNA downstream 91111 29723824 ~ 29776421 (-) True G108600
TU145907 lncRNA downstream 116996 29553459 ~ 29750536 (-) False LOC120567321
TU145909 lncRNA downstream 116996 29626656 ~ 29750536 (-) False LOC120567321
TU145908 lncRNA downstream 116996 29651261 ~ 29750536 (-) False LOC120567321
XR_005640540.1 lncRNA downstream 117021 29553435 ~ 29750511 (-) True LOC120567321
TU146068 lncRNA upstream 401216 30275864 ~ 30282627 (-) True G108702
TU146077 lncRNA upstream 472330 30346978 ~ 30356855 (-) False gask1b
TU146087 lncRNA upstream 512873 30387521 ~ 30387854 (-) True G108718
TU146091 lncRNA upstream 528012 30402660 ~ 30403036 (-) True G108722
TU146159 lncRNA upstream 778222 30652870 ~ 30654526 (-) True G108772
XM_039812690.1 mRNA downstream 8420 29852829 ~ 29859112 (-) False asb5a
XM_039812688.1 mRNA downstream 8422 29852829 ~ 29859110 (-) True asb5a
XM_039812689.1 mRNA downstream 8424 29852829 ~ 29859108 (-) False asb5a
XM_039812695.1 mRNA downstream 14848 29847910 ~ 29852684 (-) False spata4
XM_039812694.1 mRNA downstream 14848 29847910 ~ 29852684 (-) True spata4
XM_039812705.1 mRNA upstream 6542 29881190 ~ 30028138 (-) False si:dkey-237h12.3
XM_039812704.1 mRNA upstream 6542 29881190 ~ 30028138 (-) False si:dkey-237h12.3
XM_039812703.1 mRNA upstream 6542 29881190 ~ 30028138 (-) False si:dkey-237h12.3
XM_039812700.1 mRNA upstream 6542 29881190 ~ 30028138 (-) False si:dkey-237h12.3
XM_039812699.1 mRNA upstream 6542 29881190 ~ 30028138 (-) False si:dkey-237h12.3
TU145691 other downstream 1844303 28021737 ~ 28023229 (-) True G108433
TU145627 other downstream 2028425 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other downstream 2028425 27837848 ~ 27839107 (-) False LOC120567057
unassigned_transcript_477 other downstream 2088318 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 2605412 27258247 ~ 27262120 (-) False LOC120567151
TU146164 other upstream 786264 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 794883 30669531 ~ 30670849 (-) True G108781
XR_005640397.1 other upstream 1513059 31387707 ~ 31423481 (-) False LOC120566409
TU146377 other upstream 1556372 31431020 ~ 31485976 (-) True LOC120566557
TU146455 other upstream 1964894 31839542 ~ 31844234 (-) False tlx2

Expression Profile