RNA id: XM_039812705.1


Basic Information

Item Value
RNA id XM_039812705.1
length 9906
RNA type mRNA
GC content 0.52
exon number 28
gene id si:dkey-237h12.3
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 29881190 ~ 30028138 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGCTCTATAGCTGCTCCTGAGAACAGCACGCTGCACAACATCCTCGCACAAGTCCACTATTCCGAGTCGTGCACGGTCGGCATCGACGTGTTTACCAAGCCAAGCGCGTTCCTGTGGGAATTTGAAAAAGAGGTGTCTTTGAAGAATTTCAACTGTGCCAAATTGCACACGCGGCTTTTGTGAGGCAAAGGCACCGCGACGCACTGTGCCCACTGCTGCCTGCAAGTTTGGACTAAAGCGCGCCGCTGGAAGTTTATGTGCCGCTGCCTCGGACAGGCTCGCCGAAGCTCCGTGCAGgtAGAGGGGGTGGAAGCCTCAATGGACTGAAGAATAGGCCGACAGAGGTCAAAAAGTGGGGAGGGGAGTTCGGGAAATCGGTACAGAGTCACACCcggaggagggaagaggaggaggggagaaaagagtgaaataaTCCAGTGGCGAGTCTCTCAGGAGAGCGGCGGTGGTGAAGGGAAGGGAGTTGGGATACCCAGCATGCAGGCAGCATGGAACGGGTGAGGGAGCAGCGGCCTTTCTGCTCACTGTCCAAGAGccagagagaccgagagagataCTGCGAGAGAGACAAGGATCGGGAGCGCTGTTACACCGCCTCCTCTGCTGACCGGGAGGAGGGAGCCTGCCGCGTGCCCACTCAGAAATCCTACAGCTCCAGCGAAACGCTCCAGGCCTTTGACCATGACCCTTCACGAATGCTCTTTGGAGGCAGAGTCAAGGAGATGGTCCACAAGGAAAGCGCAGAGTACAGCAGGCCAGGGCAGACGTTCTCGCTGAGGCAACTCGGTTTCTGTGAGCCATCGGCTCGCAGAGGCTTGGCACTCTGCCCTGAGACGGGCCTCTCCCACCCACTCAGCAGCTACTCCAGAGGGCCGGTCGTTACAGAAAACCATGAACCTGTATCACCGGAACGTACCATGACTCTTTGGGGAACGGGGCCAAAGTCTGGGCAGGATTCATGCCTCTCCAGTCGCTCTAACTCAGCGCTCACACTCACTGACACGGAAATGGACAATAAATCGGACAATGAGATGGGTGACCATCTATCTAGTCAGCAAGGCCCGCCTCCTCTCCCACCAGCCCCTCCCCCACACAAGCAGCATCCGTCCATCACGTCCCTGAGCCGCAGCTcactggccaatcagaggagcCCAAGCCCGCCGCCCACAGCCGGCCTGGCGGCCGACTTGCAGAGTACGGCGGAATGCGTCCAGCTGCAGGACAGCTGGGTCCTGGGCAGCAATGTGGCCCTGGAGAGCAGGCACTTTCTTTTTAAAACGGGCACAGGAACAACACCTTTCTTTGGAGCAGCAGCCCCTGGTTACACCATGGCAACGGGGACAGTTTACTCCACACCGGCGCGCCCTTTGCCCAGAAACAGCCTGTCGAGAGGGGCTTTCAAATTCAAGAAGTCCCCTAAACACTGCTCGTGGAAGTGCACCGCCCTGATCGCTGTGGGGATAGCTGTGGTTCTGTCCATCATTCTCTGCTACTGCATAGCAATGCACCTTTTCGGCCTCAACTGGCAGCTCCAAGAGTTGGACAACCAGCCGGCTTTTGAAAACGGAGCAGTTGGGAAGACAGGGCCCACTCAGTCGAGCATAGTGACAGCTCTGGCTGCTGACGGAAGGACTAGCGTGCTTCATCAGGAGAACAACTCCATTGACACAGGACAGGTCGACATAGGGAAGAGAGTAGGTCAGAGCGTCCCACCAGGGGTGTTCTGGCGTTCTCAACTAAGCATGGAGCAACCACGCTTCTTGAAGTTCAACATCTCGGTACAGAAGAATGCGCTTATTGGAGTCTATGGACGAAAGGGTCTCGCACCAACTCACACTCAGTATGAATTTGTGGAGCTATTGGACGGCAGCCGGCTTATTGCCAAAGAGCATCGGACTCTAAGTGAACCAGAGACAAGGGCCTGGCTGGATCACCCGGTCACCGTCCACCAAGCCGGATTCATCCAGTATCTGGACGCAGGGGTTTGGCACCTGGCGTTTTATAATGATGGACGGAGTGCGGAGACAGTATCCTATAACACCATCATCCAGGAATCTGTCACCGAGTGCACACACAACTGTTATGGGAACGGAGAGTGTGTGGCGGGATCATGTCACTGCTTCCCAGGATTCATAGGGCCATACTGTTCCAGAGCTTCCTGTCCAGTCCTGTGCAGCGGCAATGGCCAGTACACCAGGGGGCGCTGTCAGTGCTACAGTGGCTGGAAGGGCACTGAATGTGATGTTCCTGCCTCCCAGTGTATTGATCCTCAATGCGGGGGACACGGACTGTGCGTGGCGGGCAACTGTGTGTGCAACACCGGCCACAAAGGACCCAACTGTGAACAAGTCGACTGTGTGGACCCGACGTGCTCCGGTCACGGAGCCTGTCATCACAGTGAGTGCCACTGTAACCCGGGCTGGGGAGGGATCAGCTGTGAGATCCTGAAGAGCACTTGTCCAGAACAGTGCTCCAGTCATGGCACTTTCAACACTGACTCCGGAACCTGCATCTGCGAGGCTAACTGGACAGGGGCCGACTGCTCCATAGAGGTGTGCTTGGTGGACTGTGGTCCCCACGGCTTGTGCATCAGTGGTGTGTGTCAGTGCGAGGAAGGCTGGACAGGACCAGAATGTGAGCAGAGGGACTGTCACCCACGCTGCATCGACCACGGAGTCTGCCGAGAGGGCAAGTGTGACTGCCATCAGGGCTGGACGGGGGAACATTGCACCATCGACGGCTGCCCCGGGCTGTGCAACAACAACGGGAGGTGCGTCCTGGATCAGAACGTCTGGCACTGcatctgccagtcgggctggaGAGGGCTGGGATGCGATGTAGCGACGGAAACGCTCTGCTCAGATGGCAAGGATAATGAGGGAGATGGCCTCGTCGACTGCATGGACCCAGACTGCTGCATTCAAATCTCCTGCCAGGGTCAGACCTACTGTCGCGGCTCACCCGACCCCGCTGCCATCGCCGGCCAGGGCCAGAGTTCAGCCGCCCAGGCCACATCCAAGGGCTTTTATGATCGCGTCAGCTTCTTGATTGGTCCCAGCGGCAGTCACGTGATACCCTGGGATAACCAGTTCAACAGCAGCCTGGTGTCAGTCATCCGGGGTCAGGTCCTCACGGGAGACGGGACGCCGCTGATTGGAGTCAACGTGTCTTTTCTGCACTACCCAGAGTACGGCTACACCATCACGCGGCAAGATGGCATGTTTGACCTCTTGGCCAACGGCGGCGCTTCTTTGACGCTGAGTTACGAGCGCGCCCCCTTCCCCACGCTGCACCGCACAGTGTGGCTGCCCTGGAACGTTTTCCATGTGATGGACACGGTGGTGATGAAGCGGGAGGAGAACGACATCCCCAGCTGCTACCTTACCGGCCTGATCCGGCCCAACCCTCTCATCCTGGCTACGCCCCTCTCCACTCTCTACAAGACCTCCCCAGAGGACAGCCCCATCATCCCCGAGACCCAGGTCCTTCATGAGCAAGTGGCCATACCAGGCAGTGACCTCAACCTGGTCTACCTGAGCTCCAGGGCAGCTGGCTACAAGCCCATCCTCAAGGTGCTCCTGACCCAGGACCGTCTCCCCTTTGGCCTGATGAAGGTCCACCTGATGGTGGCCGTCATGGGCCGTCAGTTCCAGAAGTCTTTCCCTGCCTTCCCTGACCTCTCGTACACCTTCATCTGGGATAAAACAGACGCCTACAATCAGAGGGTCTTTGGCCTGGCAGAGGCTGTGGTGTCAGTGGGATATGAATACGAGTCCTGCCTTGATGTGGTGCTCTGGGAGAAGAGGACAGCAGTGTTACAAGGCTATGAACTGGATGCGTCCAACATGGGAGGGTGGATGCTAGACAAACACCACATATTGGACATTCAGAACGGCATTCTTTACAAAGGCAGCGGAGAGAACCAGTTCATCTCTCTCCAGCCCCCTGTGATCACGACTGTAATGGGGAACGGGCGGCGCAGAAGCATCTCGTGTCCCAGCTGTAATGGGCAGGCCCAAGGCAACAAGCTGTTGGCACCGGTGGCTCTGGCGTGGGGCATCGATGGAAGTCTGTACGTCGGCGATTTCAACTACATCCGACGCATCTACCCATCGGGCAATGTCACAAGTATCATGGAGCTCAGTAACAACCCAGCACACCGGTATTACCTGGCAACTGATCCAGTAAGCGGGCAGCTGTACGTGTCGGACACAAACTCCCGGAGGATCTACAGACCCAAAACCTTAACCGGAACAAAGGAACTGCAGTCAAACGCAGAGGTGGTGGCAGGGACTGGGGAGCACTGTCTGCCCTTTGACGAGAACCACTGTGGCGATGGAGGCAAAGCTCCAGAGGCCTCTCTCACTGGACCTAAAGGCATCGCCGTGGGCAAGAATGGCCTGATATATTTTGTTGATGGCACCACAATCAGGAAGGTGGACCAGAACGGCATCATTTCCACTTTCCTTGGTTCCAACGACCTGACATCGGCTCGCCCTCTGACCTGTGACAACAGCATGGACATCAATCAGGTGATTCTGGAGTGGCCCACGGACCTAGCAGTTAGCCCCATGGACAACTCGCTGTATGTCTTGGACAACAATATTGTGCTGCGCATCACAGAGAACGGTCAAGTGAGCATTGCAGCTGGCCGACCTCTTCACTGCCCATTGGCTGGACTGGAGCGTGGTGTGGCGGGTGGTCAAAGGGCCCAGTTAACCCCTATAGAATCTGCTGTTTCCATCGCCATATCTTACCATGGGGCCATCTACATAGCAGAGACAGATGAGAGAAAGATGAGCAGGATCCGAAAGGTTTCTGTGGATGGAGAGCTAACACATTTGGCCGGGTCTCCCTCCGACTGTGATTGCAAGAATGATGCCAACTGTGACTGTTATCAGACAGGGGACGGCTATGCCAAAGATGCGAGGCTCAATGCTCCATCTTCTTTAGTGGCAGCTCCAGATGGAACACTCTACGTGGCAGACCTGGGCAACATCCGCATCCGGGCCATTTCTAGAAATGGGCCAACTTCCAGTGCCAATACATACGAGGTGGCTTCGCCTGATGCCCAGGAGCTGTATGTATTTGACAGCAATGGTACCCACCAACACACTGCAAGCCTGCTCACTGGTGACTTGAAATATACGTTCAGCTACAGCACAGAGAATGACATCACAGCTGTTACTGACAGCAGCGGCAACACTCTGAGAATCCGTAGAGATCCTAACCGCACACCGGTGCGTATCGTCGCCCCTGACAACCAGGTGATCTGGCTTACCATGGGCACCAACGGCGGACTGAAAACACTCACAGCACAGGGCCAGGAGCTAGTGCTTCTTACTTACCATGGTAACAATGGCCTGCTGGCTACAAAGACATCAGAGATTGGCTGGACAACTTTCTACGACTATGACAGTGAAGGACGGCTACTGAATGTGACGTTCCCCACTGGAATGGTGAATAACTtgtacacagacatatacagcGCTTTGACGGTGGACATTGAAAGCTCTGTGACAGATGAGGAAATCAGCATCACCACTAATACCTCAACCATTCGTGCCTTCTACACTCTGGCTCAGGACCAATGTAGAAGCAGCTATCAAGTGGGCTTTGACAACTCGCTGAGGATTACCTATGCCAACGGGATGGACACCCACTACCAGACAGAGCCTCACATCCTGGCAGGCGCTGCCAACCCAACTGTAGCCAGACGCAACATGAGCTTGCCAGGGGAGAGTGGGCAAAACTTGGTTGAGTGGCGCTTCCGTAAAGAACAAGCCAGAGGGAAAGTTATCGTGTTTGGACGCAAGCTTAGGGTAAACGGACGAAACATTCTTTCTGTCGATTACGATCGCACCCTGAGGACAGAGAAGATTTATGATGACCACAGGAAGTTCCTCTTAAAGATTATATACGACACAGCAGGCCACCCAGTGCTCTGGGTGCCCAGCAGTAAGCTACTGCCAGTTAATGTGAGCCGCACTAGCAGTGGGCAAATCAGTGTCCTGCAGAGAGGCCCCACCACTGAGAGACTTGAGTATGATAGCCAAGGCCGCCTGGTTTCCAGGGTGTTTGCCGATGGGAAGATATGGAGTTACACCTACCTGGAGCAGTCCATGGTTCTCCTGCTCCACAGTCAACGGCAGTACATATTTGATTTCGACTCTCTGGACCGGCTTTCTGCTGTCACGATGCCAAGCGTAGCCCGCTACACGATGCAGACCATCCGTTCAGTGGGCTACTACAGGAACCTTTATCACCCCCCAGAGAGCAACGCCTCAGTGGCTGTGGACTACAGCGAAGACGGCCTCCTACTGAGAGTAGCACATCTCGGCACAGGCCGTAGGATCCTGTACAGGTACCGCCGGCAGAACAAACTGTCAGAGATCCTGTATGACAGCACAAGGGTCAGCTTCACCTACGACGAGACGGCAGGAGTGCTGAAGACAGTCAACCTGCAGAATGAAGGATTCATCTGCTCCATCCGTTATCGCCAAGTGGGTCCACTGGTGGACCGGCAGATATTCCGCTTCAGTGAGGATGGCATGGTCAATGCACGCTTTGACTACACCTATGACAGCAGCCTGCGTGTCACCAGCGTGCAAGGCGTCATCAACGAAACACCACTACCCATCGATCTATACCAGTTTGATGACATCTCAGGAAAGGTTGAACAGTTTGGGAAGTTTGGGGTGATCTACTATGATATCAATCAGATCATATCCACTGCCGTCATGACCTACACCAAGCACTTTGATGCCCATGGACGCATCAAGGAGATCCAGTATGAGATATTCCGCTCACTTATGTACTGGATCACTTTCCAGTATGACGATGTGGGGCGAGTCACCAAACGAGAGATCAAGATCGGCCCCTTTGCTAACACCACCAAGTACAGCTATGAGTATGATGTGGATGGCCAGCTCCAGACTGTGTACCTGAACGAGAAAGTGATGTGGCGCTATACGTATGACCTTAATGGAAATCTGCATCTGCTGAATGCAGGAAACAGTGCAAGACTTCTACCTCTGCGCTATGACTTGAGAGACCGTATCACCCGCCTTGGAGATATCCAATACAGAATGGATGAAGACGGTTTCCTCCGTCAGAGGGGAGCAGAAATCTTTGAGTACAACTCCAAAGGTCTCTTGGTGCGGGTCTACAGCAAGAGCAACGGATGGACCATTCAGTATCGCTATGATGGACTCGGACGCAGAGTGTCCACCAAGTCAAGCTTGGGCCAACACCTGCAGTACTTCTACGCAGACCTGAGCTACCCGGCTAGGATTACACATGTGTACAACCACTCCAGTTCGGAGATCACCTCACTCTACTATGACCTCCAAGGCCATCTGTTTGCTATGGAGATCAGCAGCAGTGAGGAGTTCTACATTGCCTGTGATAACACCGGCACACCTCAGGCTGTCTTCACCAGCAATGGCCTCCTGGTCAAACAGCTCCAGTACACAGCATACGGCGAGGTCTACTTTGACTCAAACCCAGACTTCCAGCTGGTGCTCGGGTTTCACGGAGGACTgtatgaacccctgaccaaacTACTGCACTTTGGGGAGCAGGATTATGATATAATGTCTGGAAGGTGGACTATCCCAGATGTCTCTACTTGGCAACAAGTTGGCAAAGAGCCAGCTCCTTTTAATTTATACATGTTCAGAAATAATAACCCCATCAGCAAAGTCCATGAAGTGAGAGAATATGTTGCAGATGTGAACAGCTGGCTTGTAACCTTTGGCTTTCATCTTCACAACACCATTCCTGGGTTTCCGGTCCCAAAGTTTGATTTAAGCATGCCATCCTATGAACTGAGGAAGAGTCAGCTCTGGGATGATCTGCCGTCTATCTCTGGGGTCCAGCAGGAAGTAACCAGACAAGCTCATTCTCTCTTGTCATTCGAGCGGCTGCCAGAGGTCCATCTCAGGCGAGGTCGCAGAGGTGAAAAGTCTTGGCTGTGGTTCTCGGCGGCAATGTCTCCCATCGGAAGAGCCGTTATGTTCGCTATCTACAAGGGCAGCGTTCACACTCATACGCTCAACGTGGCCAGTGAGGACTGTATCAAGGTCGCAACCATCCTCAACAACGCTTTCTATTTGGAAGACATCCACTTCACTATAGAAGGACGGGACACACACTACTTTGTCAAGCCAGGCCTTCCAGACGCCGACCTTGCTGCGTTGCACCTCACTAGTGGACACAAGACTCTGGAGAATGGTGTCAATGTGACGGTTTCTCAGTCCACCACAGTCATGGATAGTCGGACTCGCCGTTTCGCAGATGTGGAGATTCGTGCCGGTGCTCTAGCTCTTCATATTCGCTATGGATCCACGGTGGACGAGGAGAAAGCGCGAGTTGTTGAGCTCGCCCGTCAGCGCGCCCTTGCTGGTGCGTGGGCGAGAGAACAGCAGCGAGTGCGAGATGGCGAGGAAGGAATCCGTCCCTGGACAGAGGGGGAGAAAAGGCAGCTTCTGAGTAGTGGAAAAGTTTTGGGGTATGACGGGTACTATGTGCTCTCCATTGAGCAGTACCCAGAATTATCAGACAGCACTAATAACATCCACTTTCTTCGGCAAAGTGAAATTGGGAAAAGGTAACAATACGAGGTGCATCTTCTGCCAAAGAGACTTGGTTTTGGTAGAGACATACAAGCGGACAAAATGAAAAGCAACTGAATCAAAAGGTTGCTGCTATGTACCCCGAGTGTCgtgtgtttttataaaaaaacaacaaaagaaagaacagaaaaaaaaattcaaggGGTCAAAAGCAATGCTGTGCATTGTGACCTAGGGACTACAGAGTAAATGTATAACTACACCAAGCCTTAACATGGCAATTACAGGTCAGTTCCTCTGTTGCACAAGCCTTTTAGACTCTGGACTCTGAAGCAGAGGAATAGTGGTGTCTTTCTGGAAACAGTGAGCTGATTTaggtgttttatgttttgtgtttttcatcAAGAGAAGTCTGGTTCAACAGAAAGTATAATAGGAGCAAAGGAAATGTTTACATTATGCATATCTGCACTTCTCTAGAAGTACGGGGCTCGAGAGTTCACACTCCTAGAGCAAGCGGTGCCCTTgatcaaatgtttgtttttaaaatcagaGACTTCTGACGTTAGAGATATCCTCACCCAACAACCACTATATATACCAGATTTAGCACTGTAAACATCAAAAACGTTGAAATGTCTTATTCTCTTTGAGATGcttttaaacagaaaaaaagaaaccgtTTCCATGTTTAAATACCCAATATTCATTGTGAAAAAAAGTGCAGCAAAAGGTATGAAGAACTCTGTTGGGGGGTGGCGGGGAGGGGGCACAAATGTGTCTTGAATAGCACAGGGATACCATGTTTTGTAAATTATGCAAGAGTTTTATGgcgttttctttttataaaccgAATCAATGTATGTATTAGTCATATTAACAGtaatttatgttgtgtttatacatgacaaataaaatccagctgatttttatttttttttatttgtcagacaagcattttattttttttttaaagttacgtTATTGCTTTGTGGGGCTTCTTCACAATGCTCTGTTTAAGTAATTAACAGAAACATGTGCATGTAGTGACAAGTATTTACAAGTGGTGATGTATCTATAACATGCCGTCAGCTATTATTTCCactaaatgtaatgtttattggGCATAATGCCTTTTGACCTGGCTTCCTGTCCAATGCATATTTCATCAACACAAATATTTCATGAACCCATCTCACATAAACAAGGTTACAGTGGATCCAAATATAGATCACCTCCATGTTTTCAGTAGTTATACTTTTTTTGAATGTTAAATGCACTCAAGGATTAAAATGATATTGGGGttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145917 lncRNA downstream 104769 29723824 ~ 29776421 (-) True G108600
TU145907 lncRNA downstream 130654 29553459 ~ 29750536 (-) False LOC120567321
TU145909 lncRNA downstream 130654 29626656 ~ 29750536 (-) False LOC120567321
TU145908 lncRNA downstream 130654 29651261 ~ 29750536 (-) False LOC120567321
XR_005640540.1 lncRNA downstream 130679 29553435 ~ 29750511 (-) True LOC120567321
TU146068 lncRNA upstream 247726 30275864 ~ 30282627 (-) True G108702
TU146077 lncRNA upstream 318840 30346978 ~ 30356855 (-) False gask1b
TU146087 lncRNA upstream 359383 30387521 ~ 30387854 (-) True G108718
TU146091 lncRNA upstream 374522 30402660 ~ 30403036 (-) True G108722
TU146159 lncRNA upstream 624732 30652870 ~ 30654526 (-) True G108772
XM_039812697.1 mRNA downstream 6542 29867532 ~ 29874648 (-) True tdo2a
XM_039812690.1 mRNA downstream 22078 29852829 ~ 29859112 (-) False asb5a
XM_039812688.1 mRNA downstream 22080 29852829 ~ 29859110 (-) True asb5a
XM_039812689.1 mRNA downstream 22082 29852829 ~ 29859108 (-) False asb5a
XM_039812695.1 mRNA downstream 28506 29847910 ~ 29852684 (-) False spata4
XM_039813901.1 mRNA upstream 62810 30090948 ~ 30102919 (-) True neil3
XM_039812588.1 mRNA upstream 111671 30139809 ~ 30184692 (-) True pdgfc
XM_039812589.1 mRNA upstream 111671 30139809 ~ 30184691 (-) False pdgfc
XM_039812590.1 mRNA upstream 111671 30139809 ~ 30171193 (-) False pdgfc
XM_039812540.1 mRNA upstream 318899 30347037 ~ 30356856 (-) True gask1b
TU145691 other downstream 1857961 28021737 ~ 28023229 (-) True G108433
TU145627 other downstream 2042083 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other downstream 2042083 27837848 ~ 27839107 (-) False LOC120567057
unassigned_transcript_477 other downstream 2101976 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 2619070 27258247 ~ 27262120 (-) False LOC120567151
TU146164 other upstream 632774 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 641393 30669531 ~ 30670849 (-) True G108781
XR_005640397.1 other upstream 1359569 31387707 ~ 31423481 (-) False LOC120566409
TU146377 other upstream 1402882 31431020 ~ 31485976 (-) True LOC120566557
TU146455 other upstream 1811404 31839542 ~ 31844234 (-) False tlx2

Expression Profile