RNA id: XM_039812730.1


Basic Information

Item Value
RNA id XM_039812730.1
length 1321
RNA type mRNA
GC content 0.46
exon number 7
gene id il12ba
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 193931 ~ 196441 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACGgtatttgtctgttgtctgtttgtctgtgcatTTCTGCAAGTCAGTCATCAAAATCCAACAGACCACTGGACTCTGCTGCCCCACATTATGGTTGTGGAGGTGGATGGCACGGAGGGCCAGCAGCCCCTGAGCTGCCTGGAGCTGCCAGACGAGCACATGGCAAGAGACATCAAGAATGAGGATATTTTTTGGAGAAAGAACGGGTGGCAGGAAGAACAGAGGGGAAACACGTACCTGCTGCAGCTGGAGGAAAGCTTAGGAGGGGGAAACTACACCTGCCACAGCAAGGATGGATCACTCCTCAATCACACCATGGTTCTGATCCAAGAGGACGAAGCTATCAGGAGAATTCTTATGAAAAGTGACCAGGAAGGTTATTTAAAGTGCTCCGCTCAAAATTACAATGGAGAGTTCCACTGCTCCTGGACCTGGCACAGCAATCGCGTTGGCAAAGTAGCATTCATCAAAGCTCAACGTGTATCTGACAGCCAGTGTTCTGTGGATGAAAGTGGCCAGCGTTGGACATGCTCTTCAGGTCAGAGTAACTTCAACTGTTCAGTGGACGACAGCGGACACAGGATCGTGTGCCTGGAGGAGCAGCACTGCCCCTACGCTGAGGAGAGCCAGCAGATCCACATTAGCGTCTACCTGAGGACGGAGCATTTCCTGCTGGAGAACTACTCGAAACGCTTTTACCTGTCAGAGATAGTGAAACCCGACAAGGTGAGCATTGGTCAAGTCAGCCCCACGATGATAAAGTGGAGATACCCGAGCTCCTGGAGCAGCCCCTACTCCTACTTCCCTCTTACTTTCGAGATTGCACAGCTCAGGGGGCGATGCAAAACGTGTGACAACCCGTGCACTGACTCAAAAGCCACTAAGACCTCGAGAGTTTCCTCTACCAACATTTGTCAGTTTGAAGTCAAGCACAAGGTTAAGGCCGTCTGTGTCCGGGCCAAGGATGCTCTCTGTAACTCCCAATGGAGCGAGTGGAGCTATCTCAGATTGAGGAGACACAAGAAGAACAAACGTCAGCAAAGCAAAAATTAAGCttaacagaagaaagaaaatccTGAAACTGGATGTCTCttaaaaatgttatgtttatttagacgcttttatatatttatatttattttatcttataTCATGTTGtttgtaatatgtcaatattcTTAATGGTAATtgaagaaataaaatatttaacacaatctttttttgtttcctgCCCTTTTTTCCCACTTCCAATCAGCAGCTCCATCCTTGCCTCAGCCAGAATTAGAAGAAGTGATAGTACCACATTCTCCTATTACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137655 lncRNA downstream 126918 65234 ~ 67013 (-) True G102240
TU137657 lncRNA downstream 126918 65501 ~ 67013 (-) False G102240
TU137656 lncRNA downstream 126918 65635 ~ 67013 (-) False G102240
TU137659 lncRNA downstream 129432 64025 ~ 64499 (-) True G102241
TU137617 lncRNA downstream 131350 62346 ~ 62581 (-) True G102222
TU137700 lncRNA upstream 13688 210129 ~ 210442 (-) True G102273
XR_005640573.1 lncRNA upstream 30787 227228 ~ 229439 (-) True LOC120567447
XR_005640572.1 lncRNA upstream 33936 230377 ~ 231456 (-) True LOC120567446
TU137748 lncRNA upstream 187008 383449 ~ 388245 (-) True G102309
TU137794 lncRNA upstream 269974 466415 ~ 468450 (-) False tmsb2
XM_039813786.1 mRNA downstream 6581 136595 ~ 187350 (-) False ebf1a
XM_039813783.1 mRNA downstream 6584 133516 ~ 187347 (-) True ebf1a
XM_039813785.1 mRNA downstream 6585 133516 ~ 187346 (-) False ebf1a
XM_039813784.1 mRNA downstream 7435 133516 ~ 186496 (-) False ebf1a
XM_039812998.1 mRNA downstream 85453 86409 ~ 108478 (-) False clint1a
XM_039812960.1 mRNA upstream 115491 311932 ~ 336042 (-) False sh3tc2
XM_039812961.1 mRNA upstream 115491 311932 ~ 336042 (-) False sh3tc2
XM_039812962.1 mRNA upstream 115491 311932 ~ 336041 (-) False sh3tc2
XM_039812958.1 mRNA upstream 115491 311932 ~ 333267 (-) True sh3tc2
XM_039812959.1 mRNA upstream 115491 311932 ~ 331935 (-) False sh3tc2
TU137703 other upstream 24151 220592 ~ 231444 (-) True G102276
TU137704 other upstream 34233 230674 ~ 231444 (-) False G102276
TU137926 other upstream 642520 838961 ~ 841546 (-) False insb
XR_005640447.1 other upstream 1984602 2181043 ~ 2197917 (-) True sh2d1aa
XR_005640435.1 other upstream 2695978 2892419 ~ 2898545 (-) False pabir2

Expression Profile