RNA id: XM_039812781.1


Basic Information

Item Value
RNA id XM_039812781.1
length 2483
RNA type mRNA
GC content 0.40
exon number 5
gene id si:ch211-255i20.3
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 28575742 ~ 28583287 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAACAGCAATAAGAACTAACCATCTGGTGCGAGAGGGAGCTCTCCTTCCGTTTTGAAGGACGAAGGAGAGGAAAATTACTGAGACAGAGAATCAGGAGAAACAGGAGCAGATTCATTTTCTGGCTTTCCCTAACAGTAGTTCCATCAGCTAAGTCTGAGAGAAGTAAGTGTAAAGTATACAAGTACACAGTACTATATGATGAGAATATGTTGCAGTGTGTATACAATACAAGGGATTTTATTGCCATAACCAATCAGGTTTCCAGGATTTTTTTGGTATGCTCAGGAtacaggaaaaaaggaaaatgtccCCCCACATAATGTTTATAATATACAACAAACAACAAGATAAATACTCTTGCCAtaggaattttttttaatttgtttcaaAATGAAGGAATTGCTGTAAGAACGAACTAAAGTCGCACTATGTGGTTCACAGTAAATTGCAGATATTAATGATAGTATTCATTAAAAGATCGGTTTTGTAATACATTGCAGTGAGACATGCTATAAATCCATTGCAGTTTAAAACTGAATCTATTATTTCAATGGCAGGTATATTAAACGTATTGATTTAGTATTCACACTCTGTAAAACCACTGAAGTGTGGGAGGAGAAGGAAAAATGGATTCTTTGCTTACTTTGAGGAATAACAACTTTTGCAGATGCTAAATATGAGAAGGATTTATtctgtgtgtggggtgtgggggTTTACTTTAAAAGTGACCTCATCTAGGGTTAGCATATGGCAACTATTGTATGTAATGGTTTGGATTACAATTGCCACTCAATTTCTGAAGACATTTGAACCTTCTTTCATACTGTGGTAAAAGACACAGACTAGTAATCCTTACTGCGTTACTAGGTTAAAAAGGTGAATACCATATTTTACTAATAAAAATTAAGTCAGTAGGTCAGATGAGAAGTGCATGTCTAATTTGTCAAGATAAACTAATAATCACTATACCACAGCAGTGTGCTCATACATATTCTCAGCCTAGAGGGACAACCAAATGGATAAACACCTTCGTGGATATGTTACTTCCTGCATCTTGTTGATAGCTAGTGATATATCCCTCAAGGCACAGTTCAACATTTATCACTTTGGATTTAGTGTAGTTAATGCAGAGCAGGCAATTGTTCCTGCGATGGAAATAAGTCTACTGCAGTGTTAAACAAGTCTACTGCGGTGTTAAACAAGTATACtgcaataaatattttctgtttaatagCAAGGAAATATATAAATGTTGCATGTGCCAGAGTGCTACTCCTACTTCCATATTGGTGTATTATGAGCACACTGTTGGATTATCTGTATCTGCAGCAAGTAGTCAGTCCCAGTCAATCGCTATTCTTAGCAGCTTTGCTATTGGCTCCCAGTTTAACCAGTCACAAAATGACCAGAATGTCTCGTCACACaaagcagcacctgtgagtttctCACACTCAAACTGTCTCCCTTATAGCCTTCCACTTTAAATACACGCTATAGGACATGAGTGTTTGGCTAGTCGATGAAAAATACCTCAATCCTGAGCTAGAGTTCGCagatctacaaaaaaaaaaaaaaaaaacgtcaaactGGAACTACAGGCCAACATTTGGACGTCACATGTGTTGTAATTTAATAGCTCATTGTTAACTGAAAATGGGTTTGCAAGGCATTGGCTTTCTTCTGCAGTGTTACCTGATGTTGGCAGCAGCCATGTATTTTGATCTCGGAGAGCAGGAGGAAAAATGCATCATCGAGGAGATTCCTGAAGACATGCTGGTCACCGGTTATTTCTTGTTGGAGCCTTGGGATTTGAAGGTGTATTCCCACTACCCACAACTCGGCGTCACTGTGACAGTCAGAGACCCAAACCATGAGGTTCTGATGTCCAAACGCTACGGTAAATTTAGTAAATTCACCTTCACAGCTCACGCCTCTGGTCAGCACTACCTTTGCTTCCAAACCAACTCCACTAGGTTTTCTGTCTTTGCTGGAGAGAAGCTGAAGCTACATTTGGACGTTCAGGTGGGAGAGCACTCGATTAACCCCAAAACCGACAAGACCAAAGACAACATGGAGACTCTGGAGAACAGCCTCAGCCACCTCATTGATCAGATGATGTACATCATCAGGCAGCAGGAGTACCAGAGGgagaaagaggaggtgtTTCGTCAGATCGGGGAGGACACCAACAGTAAAGTGCTATGGTGGGCTGTGGTGCAGACCTTCATTCTGCTGTCAGTTGGTTTCTGGCAGATGAAACGACTCAAAGACTTCTTCATCGCCAAGAAGCTGGTCTGATGATGAACTCTGACCTGTCAGCTTTAAGCCTGATGACCGCATGTCCTGCCCATACCTGTCCAAATATATACTTTGCTGCCCTTAAAACAGAAGGCTATTGCATAAGGCTGGACTGTAATCTTGAATTGGGCTCATATTCCCACACCTGTTTATGCTTCTGTTAAAATAAATTGATATCCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145744 lncRNA downstream 17539 28556936 ~ 28558203 (-) True G108476
XR_005640408.1 lncRNA downstream 479615 28095648 ~ 28096127 (-) True LOC120566468
TU145692 lncRNA downstream 545006 28024570 ~ 28030736 (-) False LOC120566547
XR_005640500.1 lncRNA downstream 570893 28003534 ~ 28004849 (-) False LOC120566994
XR_005640395.1 lncRNA upstream 74737 28658024 ~ 28662232 (-) True LOC120566386
TU145808 lncRNA upstream 94992 28678279 ~ 28681099 (-) True G108524
TU145832 lncRNA upstream 131589 28714876 ~ 28717468 (-) False fam13b
TU145837 lncRNA upstream 214335 28797622 ~ 28807991 (-) False cxcl14
TU145845 lncRNA upstream 249888 28833175 ~ 28928905 (-) False LOC120567081
XM_039812779.1 mRNA downstream 122 28567907 ~ 28575620 (-) False LOC120566384
XM_039812777.1 mRNA downstream 122 28567907 ~ 28575620 (-) False LOC120566384
XM_039812778.1 mRNA downstream 122 28567907 ~ 28575620 (-) False LOC120566384
XM_039812776.1 mRNA downstream 122 28567907 ~ 28575620 (-) True LOC120566384
XM_039813715.1 mRNA downstream 154570 28172470 ~ 28421172 (-) True slit3
XM_039812773.1 mRNA upstream 122 28583409 ~ 28591619 (-) True spon2b
XM_039812768.1 mRNA upstream 40012 28623299 ~ 28653205 (-) True LOC120566377
XM_039812769.1 mRNA upstream 42814 28626101 ~ 28653207 (-) False LOC120566377
XM_039812788.1 mRNA upstream 131576 28714863 ~ 28795508 (-) False fam13b
XM_039812789.1 mRNA upstream 131576 28714863 ~ 28795508 (-) False fam13b
TU145691 other downstream 552513 28021737 ~ 28023229 (-) True G108433
TU145627 other downstream 736635 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other downstream 736635 27837848 ~ 27839107 (-) False LOC120567057
unassigned_transcript_477 other downstream 796528 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 1313622 27258247 ~ 27262120 (-) False LOC120567151
TU146164 other upstream 2077625 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 2086244 30669531 ~ 30670849 (-) True G108781
XR_005640397.1 other upstream 2804420 31387707 ~ 31423481 (-) False LOC120566409
TU146377 other upstream 2847733 31431020 ~ 31485976 (-) True LOC120566557
TU146455 other upstream 3256255 31839542 ~ 31844234 (-) False tlx2

Expression Profile