RNA id: TCONS_00006647


Basic Information

Item Value
RNA id TCONS_00006647
length 334
lncRNA type lincRNA
GC content 0.25
exon number 1
gene id XLOC_003395
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18832913 ~ 18833246 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttttttatttatttattttattttttgtttttatatatatattttattattattttattttctactgcTGTACCCTttgagtatttgtatttatttattctcggcactgttgttgttgttgttgttgttgtttttttttctgtttttttttttttgttttttttcccttaatgCATGAATATGTAACTATATTTtattcagagagaaagaaaacgtgagcaaaattGTATTCTACCACCACATTGGATCAGTTGATGTCTAATGATTCTGTGTATCTGATGCTGTGGCTCTCTGACtaacatatttcaataaaaacaGAGTTAAACTAAAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0042255 ribosome assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000168115

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008585 lncRNA upstream 90810 18741027 ~ 18742103 (+) True XLOC_003394
TCONS_00006646 lncRNA upstream 124854 18702362 ~ 18708059 (+) False XLOC_003393
TCONS_00008584 lncRNA upstream 124854 18704129 ~ 18708059 (+) True XLOC_003393
TCONS_00008582 lncRNA upstream 869460 17956841 ~ 17963453 (+) False XLOC_003381
TCONS_00008586 lncRNA downstream 2054864 20888110 ~ 20890881 (+) True XLOC_003405
TCONS_00008589 lncRNA downstream 2094995 20928241 ~ 20930324 (+) False XLOC_003407
TCONS_00008588 lncRNA downstream 2094995 20928241 ~ 20930324 (+) False XLOC_003407
TCONS_00008587 lncRNA downstream 2094995 20928241 ~ 20930324 (+) True XLOC_003407
TCONS_00006682 lncRNA downstream 2352223 21185469 ~ 21186684 (+) True XLOC_003413
TCONS_00006644 mRNA upstream 133344 18612421 ~ 18699569 (+) True XLOC_003391
TCONS_00006643 mRNA upstream 134654 18612166 ~ 18698259 (+) False XLOC_003391
TCONS_00006642 mRNA upstream 588352 18216404 ~ 18244561 (+) True XLOC_003390
TCONS_00006641 mRNA upstream 589211 18205766 ~ 18243702 (+) False XLOC_003390
TCONS_00006640 mRNA upstream 632212 18183220 ~ 18200701 (+) True XLOC_003389
TCONS_00006648 mRNA downstream 39867 18873113 ~ 19085997 (+) False XLOC_003396
TCONS_00006649 mRNA downstream 39884 18873130 ~ 19020045 (+) False XLOC_003396
TCONS_00006650 mRNA downstream 40373 18873619 ~ 19091767 (+) False XLOC_003396
TCONS_00006651 mRNA downstream 226833 19060079 ~ 19072529 (+) False XLOC_003396
TCONS_00006653 mRNA downstream 227032 19060278 ~ 19068434 (+) False XLOC_003396
TCONS_00006645 other upstream 156356 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006630 other upstream 848139 17964689 ~ 17984774 (+) False XLOC_003382
TCONS_00006627 other upstream 1319281 17441957 ~ 17513632 (+) True XLOC_003377
TCONS_00006626 other upstream 1321176 17441887 ~ 17511737 (+) False XLOC_003377
TCONS_00006625 other upstream 1332125 17441887 ~ 17500788 (+) False XLOC_003377
TCONS_00006652 other downstream 226853 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006668 other downstream 1199820 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006677 other downstream 2218982 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006686 other downstream 2817276 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006698 other downstream 3880769 22714015 ~ 22714131 (+) True XLOC_003425

Expression Profile

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