RNA id: XM_039812854.1


Basic Information

Item Value
RNA id XM_039812854.1
length 5841
RNA type mRNA
GC content 0.46
exon number 24
gene id dlg3
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23770291 ~ 23856291 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTACTGTAACCcgtctgtgggtgtgtgcacCACTGCTGACCACTGAAGTAATACTTAAGACCTGTTTCAGACAGACGGGGAGCGTCCGACTGGATTTAAAAACTCAACCTCTCACTTGTTTGTGAAGTAGGCGCGTCAGTAACGTTATATAATATAAATCCGGGACTATTACTGCAATTATTTCTcttctaaaaaacaaacaaaccccaAACTGTAATttacatgactttttttggagtTGGACACACTATGGTTCATAAATATGACACAGAGCGAGCAGTGGGGCTGCTCAGACGATACCAGGCCAACCTGACCAGTCCAGAGGAGCAGGCCCTGAAGTCCAGCGTGGGTAAAGTCTCTTCCATCTTGGGCAGCCAGCTGTTCCATGCCCTTCTTGATATTCAAGAGTGTTACGAGGTGACCTTGCAACTGAACACAGAACAAACTGTTGTGAAAGAAGACAGCAGGCAGGATGCGTGGGAGgaggaggaggagggtgtgtCTCGGGTGCGAGTGACCAGCAGGAGGAGCCCCCACAAAGTGGAGCGAGTTTCTGGCCTGGTGACTCTATCTCATGTCGATGTGCCAAAGGCCAACCCTCCCCCCATCATCGTCAACGCAGACTCACTAGATGCAGGCCCTTATGTAAATGGCAGTGATGGGATGTACAAATATGAAGAGATCATTTTAGAGAGGGGGAACTCTGGCTTGGGCTTTAGCATTGCTGGAGGAATAGACAATCCCCACATTCCTGATGATCCGGGGATCTTCATCACAAAGATTATCCCTGGAGGAGCAGCTGCTATGGATGGAAGGCTGGGggTGAATGACTGCGTGCTGCGTGTGAACGAAGTGGACGTGTCTGAGGTGGTTCACAGTCGGGCGGTGGAAGCCCTGAAGGAGGCGGGGCCGGTAGTGAGGCTGCTGGTCCGACGGAGACAGGCACCACCCGAGACGATTCTGGAGGTCAACCTGCTGAAAGGGCCCAAAGGGCTTGGATTCAGCATCGCCGGAGGGATCGGCAACCAACATATCCCAGGAGACAACAGCATCTATATTACCAAGATCATAGAAGGAGGAGCTGCCCAAAAAGATGGACGGCTGCAGACTGGAGACCGCTTGCTAGCTGTGAACAACATCGTGCTACAGGACGTGCGTCATGAGGAGGCAGTGGCTGCGCTGAAGAACACCTCTGATATGGTTTACCTCAAGGTGGCCAAGCCAGGACCTGTGCATCTCAACGACATGTACGCCCCTCCAGACTACTCCAGCAGCCTGGCCCTCCCCCCAGCCTTCCCCACCATGGTGGACAACCACGTCAGCCACAACTACATGGGTGCAATGGAACCCAAACCAGTGTACCCACCGCCCCAGGTCACCCCGTCCAGGTACTCGCCAGTTCCCCGCCACATGATGGGGGAGGAAGACTTCACAAGGGAGCCAAGGAAGGTGTTGCTGCACAAGGGCTCCACAGGCCTGGGCTTCAACATTGTTGGTGGGGAGGATGGAGAAGGCATCTTCGTCTCCTTCATCCTGGCAGGAGGGCCGGCTGACCTGAGCGGTGAACTGAGGAGGGGAGACCGGATTCTCTCGGTGAATGGAGTGAACCTAAGGAATGCCACACATGAGCAGGCAGCTGCAGCGCTGAAGAGAGCTGGACAGACTGTCACCATCATAGCTCAGTACAGGCCTGAAGAGTATAGTCGCTTTGAGTCCAAGATCCACGACCTGAGGGAGCAGATGATGAACAGCAGCATGAGCTCAGGATCAGGCTCCCTGCGCACCAGTGAGAAACGCTCCCTCTATGTCAGAGCTTTGTTTGACTATGATCGAACGAGGGACAGCTGCCTGCCCAGCCAAGGCCTGAGCTTCTCTTATGGGGATATCCTTCATGTCATAAACGCTTCTGATGACGAGTGGTGGCAGGCGAGGCTGGTCACGCCACATGGAGAAAGCGAACAGATTGGGGTCATTCCGAGCAAGAAAAGAGTTGAGAAGAAAGAGCGGGCCAGGTTAAAAACAGTCAAGTTCCACGCCAGGACAGGCATGATTGAGTCCAACAGGGACTTCCCAGGGTTAAGCGATGACTTTTATGGATCAAAGAGTTTGAAATGCCTGACGTCCAACACAAGTGACAGTGAAAGCAGTTCGAAGGGACAGGAGGACACAATTCTTTCCTATGAGCCAGTCATTCGACAGGAAATTCACTACACAAGGCCTGTGATCATACTGGGCCCCATGAAGGACCGAGTAAATGATGACCTCATCTCTGAGTTTCCCCACAAGTTTGGCTCCTGTGTACCCCATACGACTCGTCCGAGGCGAGAGAACGAGATGGACGGCCAGGACTACCACTTTGTGGGATCGCGAGAACAAATGGAGAAAGACATTCAGGATAATAAATTCATTGAGGCTGGCCAGTTCAATGAGAACCTCTATGGGACGAGCATCTTGTCTGTCAGAACTGTGGCTGAGAGGGGGAAACACTGCATTCTGGATGTGTCTGGGAATGCCATAAAACGACTGCAGCAAGCACAACTTTATCCGATTGCCATCTTTATTAAACCAAAATCCATTGAAGCCCTAATGGAAATGAATAAGAGGCAGACGTACGAGCAGGCCAATAAAGTCTTTGACAAGGCAGTTAAGCTGGAGCAAGACTTTGGAGAGTATTTCACAGCTATTGTACAGGGTGACTCACTAGAGGAGATCTACAACAAAATCAAGCTAATCATCGAGGAGCAGTCTGGTCCCTACATCTGGATCCCCTCCTCAGAGAAGCTCTGAGCTTCCCGCCGTCCCCCTTCTGCCTCCCAGAGACCCCACCCAAGCCCAAATAGCCCCCCTCCTCACCTCCTTTTTGCAGATATGTTTCATATCAAGTTTTAGTGTCATCATTATGTTACTCTCTAAATGAAAAAGAAGTCTTATCACCATTACTGTGACTGTGCACACCCCTGCATGAGTTTCTCAACAAAATCCATTCAAGACTGGAAATGCCATTCCAAAGGAATTTGTCAACAAAAGGGAAAAAGGAATAAATCCTTTTGTGAACTAGGACTGACTGAAGATCAGAATGTTACAGAAATCTGGAGAGAGGAGTTGGATTCAAAGAGAAGTTGCAGGGAAACAGAGACAAATCATACCAAGTTGGAACACTTTGTAAATGTTCAtcaaatcacatttaaaaagacACCCAAGATGAGAAGTGAAGACcaattaaggtttttttttttctttcttttctaaaGACTGGATAAAAATCGAGCCCTGCTGATGGTACTGTTCAAGGAGTCATCTCTCTTGTTTATAATGACTGAGGAAATTAGTGGAGCCTACAAACTGGTGATCTATTTATCACAAACCAGCTTGCTGTTTGGTCGTCTGCCAGTTGTCTGTGCTGCAGCTGATAAAGACATCTCTGGAGGCAGATCAAGAGGAAGAAACGCGTTGTGAATCTCTACATTTATATTATGAAATCACAAGATAAATGATAAACCCCACTGAGATTTTCCTACATATTAAATACTACACATTTTACACTTCACTAGAATTGTCAATTTGGAGGGCTGttaaatttcttttattttttctttgtggGATTTTTTGCTTGTGGTTTTTAGCTGCTCTGTGTAAAGGTTGGAGGTAGAGAAGTGTAACTGGGCTCTCTGCAAAACACCAAACTGCCTTAGATCAAATACAAATTCTGTTTTGTGACTGACTACCTGTTGTCTGTGAGGGAGGCTGCACACAATTGAcaaggaaaagagaggaaacaTTCAAATCTTTTCTTACTTGTGTCATCCAGCTGCCAGGAGGCCTGACTTGAGTGCAATAGTTAAAAACGAAGTCTCACCTCTTCaatagataaaacaaagtctCGCCTCTGTGGGCGCCTTTTCTCGCCTGCACTTCAACCTTCCTTCCTGCGTAATTAAAGAATTTGGCCATTTGATTACAATTTGGACAGCCAGAGCCTCCTAACTCATGTTGAGCAGCAGACCACCCTATTACACTCTCTGCCTTCCAAGAGGATTCTCTTCCGATTGAATGGTCATATGGTACTGTCCTATCTGCCGCCATAACGGTGGCCTTAAAACGGGTAGAACAAGACAATAATTGTATTGGATGTCCTAACAATTAAAGAGTTAATATAACCTGTTTTGGATTGTCCCCCTGTACCCCTACCAAAAATAACACTAAAGTTGGGTTTGATTAAAACCTACATGCTTTGTGTATCTCTACACGTATAAATTCTTGATGAATCTGTTGTTGGCAGGTACTGAACCACTGTGTTGAGCTCTTAGTGTGTCTAGGGTGAGCTAGACCAGCTCAGGAATCTTTAACGTACAGATACCATTTCCCCTGCGACTGAAAGGGCCATGTTTTGGCAATGACACAGAGTTCATAGCTGTCAAATGTGAACAAGTACTTCTAGTACAATTTCAACTCAACAGTGTAATCGGGCTGTATCATGTGTCTTCTCTTTTTCGTGAGGTGGCGAGTTTGTTCAAGGCCGTCGGGGCGATAACCTTTTGAGTTGGCTGTATGGCATCACCAGGATTGAAATGACCTGCTCCACCCTCCCATGCAGATCTTGGCACTGTATGttaatgtgtgcatgtgagagAGCGCGTCTGAAGGAGTACTGTGGCCCCTGATCCTGTGAACGTTCTCGCTTTCCTCCTCAGCTTTTTGAAGAGCGcaaaggaattttttttttttttcttctcagagAGCCAGACCCAACAGGAAGTGGTAACCTAAGACCTCTGGGTCCCCTGCTCTCTCCCACCCACAGAGCACCTGTACCTGCAGGCATTTTCTGAACAGGTGTGCCCACCTGCCAGGCACCACTGCTAAACCAGCTGTCATTACCTGTGTCAAAACCAGAGTTCAGGGAATAACCGAAGGGAACAGAGCCATTTATAAACTGCTTGCAGACTGTTTCAAAGGGTGTGGTAGCTGTACAATGTAAATAAGCCCCCAGCAGATCCCCCTCACCTGTGCTTCATGCATGTGTGAATCAAACTGAGACAAATGTTTTATAGACCACAAATGTCAGGTAAGTAAAGTTTGAGCTACTATTTGAGATATAATTTCCATACAAATGTGCTGTATTGTTGGTATTTCTCTTCAAATGCCTATTGGAAATTAACTAGTCAGTTGGGAATTAATTTCCCTAAAGTAGGGCCTGTCTACATGTGATTTCTTGTGGAACGTGTCTGGGTGTatagattttaaaaatatattgtaaAATAATTAAAGAGATGCAGGCAGAAACCTACACAATATCACAGAAACCAGGAGCATTGATCAATACATCATTAGAAGTTTAGAATTGGTCCTCTCTGGTGTTTAGTTGAAATGCAGCTGACTGTTAACAATGTGTGTGGTATTTATACCTCAGTCAGTCATGTCAAAGCCCAAAGAACTTGATTTCATTTTGCTCTTTCCATTGAGGTTGTGGTATATAACAAGATGGAACCTgaatgcctctgtgtgtgtataattgATGAGGGTCTTTGTTCTGATGAGAGGAAATGATGACATATATGCTTTTAATTTTGGGTGGGGGGGTCAGGGTTCTTGTTTGTACTTTTGGGTGATGATGTTTATGTTATAGCACATCTGTGCAGTAAGTGCTTGCAAACATGAACCCTTTGATTGTACAGTAGTTTCTTCCTGTCACTGCAGGTGGTACAGCCTATCAGGACACTTGGCCTCATGGTCTTCCCTGTCCTAGTCATGAGGGAACACAGTCCTGCAACTTttgtttgggttttattttggGACTTGACAAGAGtttatttgtttgaaaataaaatatgtgacTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA downstream 506392 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 526351 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 545835 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 588574 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 596873 23092565 ~ 23173418 (-) False trpt1
TU144596 lncRNA upstream 28461 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 28461 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 33769 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 343363 24199499 ~ 24259346 (-) True G107667
TU144740 lncRNA upstream 432013 24288149 ~ 24381265 (-) False LOC120566461
XM_039813298.1 mRNA downstream 13140 23710021 ~ 23757151 (-) True kdrl
XM_039813296.1 mRNA downstream 72801 23694270 ~ 23697490 (-) True cdx4
XM_039814054.1 mRNA downstream 77482 23686594 ~ 23692809 (-) True chic1
XM_039813646.1 mRNA downstream 118569 23646135 ~ 23651722 (-) True slc25a43
XM_039813645.1 mRNA downstream 124795 23643288 ~ 23645496 (-) True slc25a5
XM_039812860.1 mRNA upstream 1886 23858022 ~ 23868756 (-) False gdpd2
XM_039812859.1 mRNA upstream 1886 23858022 ~ 23868756 (-) True gdpd2
XM_039813779.1 mRNA upstream 22925 23879061 ~ 23883457 (-) True stard14
XM_039813212.1 mRNA upstream 28452 23884588 ~ 23892299 (-) True rab41
XM_039813211.1 mRNA upstream 28452 23884588 ~ 23892298 (-) False rab41
unassigned_transcript_474 other downstream 396283 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 583280 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 593291 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 604863 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 608832 23161388 ~ 23161459 (-) True trnaw-cca_11
XR_005640439.1 other upstream 30688 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 717305 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1005976 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1423467 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 1423467 25279603 ~ 25288086 (-) True G107989

Expression Profile