RNA id: XM_039812865.1


Basic Information

Item Value
RNA id XM_039812865.1
length 1711
RNA type mRNA
GC content 0.51
exon number 11
gene id macrod1
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23051417 ~ 23155345 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCCacaacaaaaatggcacatGAGAACTAACCTAACCGACGTGTATCATCACTCAGTGTTCGTACCGAAAACGAAACCTAACCACACGGTGTGGCTGACACTGATCCCCGTGAAGCTGTAGTAACACGAACCGTTAGCCCCCTCGGCGTCACTCAGCATGGCACTGCAAATATCAGCTCTATTTTCATATATCAGAGCCCCACTGTGCACTGGCCCTCTGTCCCGTGTCCGCGCTGACTTCCAGGGAGCCGGTGTCAAGTTCAAACACATCTTAACTCCTGGAAGCCTCCGGCTGGGAGGAAAGCCAGCAACAAGTCCTGTCCGCGGCCATATTAACGCTGCCCTCCGAGCTGAGAAGTTTTCAACAACGACAGCAGCACTTTTAAAGTCCAGCCAGGGGaacgcctcctcctcctcaccccgGGGGATTAGAGGTTGGCTAGGCAAGGTAGCCCTCGGTACCGCCCTCGGAATGAGCACAGTCGCTTTGGTCCATTCTCTCCACACCGGAACAGTTACCGCCATGGACCGCAAAGTTAAACTGAACTCCGCTGAGGGTGACTGGAAGGAGACCAAGGACTTCTTGCTGTCTCTGTCTGAGACGGACAGGCGTGGGTACTACAGGACGTCTAACTTCGTGCCTCTGGCCGACGTCTCAGTCTGGACTCCCACTGCAGGCGTTTCTGAACAAACTCTCTACCAGAGGAATGAAAAGTTGGACAAGAAGATTTCCCTCTACAGCGGTGACATCACCAAGCTGGAGATAGACGCTATTGTCAATGCAgCCAACAAGACTCTGCTCGGCGGAGGTGGAGtgGACGGAGCGATCCACCGTGCTGCAGGTCCAATGCTAAAAAAGGAGTGTGCTTCCCTCCAGGGCTGTGAGACCGGAGAGGCCAAGATCACTTGTGGCTACGGCCTCCCAGCAAAGTATGTGATCCACACTGTGGGGCCGATTGCACAAGGAGGAGtgggagagaaggagaagaatGCCTTGAGGTCGTGCTACAAGAACAGCCTGCACACAGCCACCGAAAACGCTGCACGCTCTGTGGCTTTCCCCTGCATCTCTACTGGAATCTACGGATATCCACCTGAGCAGGCTGTGCATGAGGCGTTGGCAACTGTGAGGGAGTATCTGGATGAGCATCATGACAAGctggaCAGAGTCATCTTCTGTGTGTTCTTGCCGACTGATAAGGAGCTGTATCTACAGACCCTCCCACTCTACTTCCCTGCCGCTGACCAATGATAGCAGCTTATTGTTCAGAGGCCACAATCAAGAGTAAACTCTGAGAGTCGATTTGTCAGATTTGGTTGCTGTGGATACACACCGCTACGCTCAGCATCCAGATTCCTTTTCCTCGCTGTCGTCACAGATCAAAACCTTCTTCAGCAggaagataactcctaaatagGTGATTGCTTTTTTGAAGTGCACACTGGCTCTTCTGCAGATGTTAATtagttccttttttttccacGAATGGTTGAGAGAGGTGATGAAGGTGTGAAATTATACTGATAGTTCTTGTGAAAAATGGACCTTAAGCTGCACTCTAACTTGAcctttgttttctgtgttcaGTGGTGCATCACGCTAAGAGTTATGTGTCCTGTGCTATTAGAATATTGGTAttccagtatgtgtgtgtgtgcgcatatgTGTGAGACAATGACAAAAGCTTattaaaacaaatcacacaGGC

Function

GO: NA

KEGG:

id description
K23518 MACROD, ymdB; O-acetyl-ADP-ribose deacetylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144063 lncRNA downstream 77657 22928854 ~ 22973760 (-) True G107220
TU144057 lncRNA downstream 174958 22875496 ~ 22876459 (-) True G107215
TU143987 lncRNA downstream 195071 22856125 ~ 22856346 (-) True G107160
TU143915 lncRNA downstream 332647 22713037 ~ 22718770 (-) True G107102
TU143905 lncRNA downstream 365959 22683733 ~ 22685458 (-) True G107097
TU144152 lncRNA upstream 14804 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA upstream 24348 23179692 ~ 23181717 (-) True G107290
TU144201 lncRNA upstream 86693 23242037 ~ 23243940 (-) True G107324
TU144202 lncRNA upstream 86693 23242037 ~ 23263899 (-) False G107324
TU144586 lncRNA upstream 636710 23792054 ~ 23792502 (-) True G107610
XM_039813613.1 mRNA downstream 87463 22950544 ~ 22963954 (-) True scyl1
XM_039813064.1 mRNA downstream 105489 22941936 ~ 22945928 (-) True LOC120566540
XM_039813611.1 mRNA downstream 111112 22935020 ~ 22940305 (-) True ints5
XM_039813609.1 mRNA downstream 116976 22919844 ~ 22934441 (-) False ganabb
XM_039812886.1 mRNA upstream 17504 23172848 ~ 23177026 (-) False trpt1
XM_039812885.1 mRNA upstream 17504 23172848 ~ 23177026 (-) True trpt1
XM_039812887.1 mRNA upstream 28848 23184192 ~ 23187058 (-) True rnaseh2c
XM_039812879.1 mRNA upstream 111570 23266914 ~ 23282656 (-) True kcnk4a
XM_039813394.1 mRNA upstream 129975 23285319 ~ 23308063 (-) False si:dkeyp-115e12.6
TU144086 other downstream 58188 22990987 ~ 22993229 (-) True G107235
TU143931 other downstream 358586 22691160 ~ 22692831 (-) True G107117
TU143804 other downstream 931350 22119685 ~ 22120067 (-) True G107015
TU143775 other downstream 1260692 21790253 ~ 21790725 (-) True G106988
TU143328 other downstream 1920447 21127838 ~ 21130970 (-) True G106728
unassigned_transcript_471 other upstream 5515 23160859 ~ 23160930 (-) True trnaw-cca_10
unassigned_transcript_472 other upstream 6044 23161388 ~ 23161459 (-) True trnaw-cca_11
unassigned_transcript_473 other upstream 10013 23165357 ~ 23165428 (-) True trnaw-cca_12
TU144153 other upstream 20347 23175691 ~ 23177000 (-) False trpt1
TU144162 other upstream 28928 23184272 ~ 23187011 (-) False rnaseh2c

Expression Profile