RNA id: XM_039812868.1


Basic Information

Item Value
RNA id XM_039812868.1
length 5363
RNA type mRNA
GC content 0.56
exon number 33
gene id atg2a
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23215893 ~ 23237164 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCAGTTGGCGTATGATAACAATAAACAACCCTGAAACAAGAGAAACGCACCAACAGGACCTGCTGCTCCAATTCGACAGAAACGTACCGAAAATATGAGCCGAGACAGCTACAGACAGTTGGAGTGACGTCTCGTCAAGTAGCAGGGGACTCGCATCGGTCCTGACGCAAAGGATTTTCGTATTTTTGTGTCAAGCCTAGGGGAGAACTTACGTAGAAGAAGTTACGGTCTACCCTTCCTTAGCCCCATGTAGCTAGCTGTGGCTCATTCCTTGTTTTTGCACACTTTGTGTTAGTCTGTTATGCAGTTGCCAGAGGACTGTACTCGCACTCGTTCTCCTTCGCCACCTCTTTGCTCCCTCTCCCCGCTCTCTCTGGCCATATGTCTCGCTGGCTTTTCCCCTGGTCAGGCTCAATCAAGAAGCGGGCCTGTCGGTACCTCTTACAGCATTACCTCGGTCACTTTCTGCAGGAACGACTGAGCTTGGACCAGCTGGGCTTGGACCTCTACAACGGCAGCGGTGTCATCAAGGAAATCAACCTCGATGTCTGGGCGGTCAATGAGCTTTTGGAGTCTCTTGGAGCTCCTCTGGAGATAGTGGATGGCTTTGTGAGCAGCATAGCAGTGACCATCCCCTGGCAAGCTCTCCTGACTGATCACTGTACCTTAGAAGTTTCTGGTCTTCAGATAACATGTCGACCCAAGTACCGGACCAGTGGGGGTTGGGACTCCCAAGGCTGGTCATCAAGCATGACCTCCAGCATGCAGCTGGCTCAGGAGTGCCTGAAGGACCCCCCGGAGGCGTCCGAGGAGCCACCTGCCCAGCTGGAGGGGCTTGAGATGTTTGCACAAACCATTGAGACGGTCCTTCGTCGTATTAAAGTCACCTTCATAGACACTATTGTTCGCATAGAGCACCAGCCCCTGGACCTGGAAACAGGCGTTGCCTTAGAGGTGCACATCAAACGGCTGGAATACTTTGACGAGGCAGTGCGAGATCCAGCCAGCCAGACTGCCGTGCCTGTCGACATCCACCAGCCGCCCGCCTTCCTGCACAAGATCCTCCAGCTGAGCGCGGTTCAGCTGTTTTACGACAGCACCGGCACAGTTCAGGGGCCTCATGAAGAGCAACGTCCTGAATCAGCCACAGCAAGTGAagtagaagaggaggaggaggaggaggatgaggaggtggaggtggagggggaGGACGAAcaagaagatgatgatgatgatgaggaggaggaagaggaagaagaggcaaAGCCCCTAACATCCCCTCCCTGTCCTGCATCTCAGCCACTACTCATAGGAAGCTGCTCCGGTTTCATTGAGACCACCGTCAAGATCAAACAGAACGACATGTTGCCTGGaccaaagTTGGAGTTGGATGGGAAGGTGGGCTGTGTCCACTTGCTGCTGTCTCCAGATCAAATAACCCATCTGACAGACCTGCTGGCAGCCCTTTGCATAGACACTGAGACAGAGACTAAGTGTGGTGGAGCATTCAGTCGTCCGTTAGACTCAGACGACCTGCGTTTGATTGAGGAGGACCTCGGTAAGCAGTTAGGCTCCAGTCCCAGAGACGAGGATTGGGATACTGAGCCCGACCTAGAGCCCTACATTACTGGCCTGGAGAATGGAGaAATGTTTTTCTCCATGGGTCCCACTGGAATGATCAGTAGCATGACATCTGTGCGCTCTGGCAGCGAGTTGTCAGACAGTGATATGGAGTCCTCCACACACAGTTTGGCTAGCTTCACACAGCCTGCACCATTGTCTGCACAGGGCATGATGAACTGTCCCAGGAGGTATCCTGCAGGCAGTTTGTCGAGTCTACCACAGGCAAGGGGCCGGACCAGAGGACGCTCGCACAGCGGCCAGGCAGAGCAGCTGAAGCCCGATGCTTTGTTGCGTCTGACTCTCGGTGGGCTCACCCTAACCCTGCTGCAGGAGGACCCACCCTCTAAGCCAGACGGAGCCTCGTCATTGGCTCAGGTGTCTCAGATGTTCTTCCAGGAGCTGGCCTTCTTCAAAGACAGCATGTTTAGTGAGAGGGACTTCCACCATCTGAGAGGCGGCTTTGCCAAGGCCTGCCCACACTCCCATCTCAGAGTGACAGGAGCAGCAGTGCAGGTTGCTTGTGAGATGCGGAGCGGGACACGCCACAGTCGGGCCATGACCTCGGACCTTTCCTTCAGCAGATTGGAGCTGTTAGAGTGCCTCTGGGAGGACGGAAAGCCTCAGTACAGCGAGTTGCTTCAGTTCCAGAAAGCTGGTCTGTTCACAGTTGGAGCTGCAGCCAGACCGTGTGCCCAACTACACTACGGCCTCACTGAAAAACACCTGCGTAGACGGGTGGTGCGGCGGGACAGTGTAGTGTGGGTGGAGCTGGCAGAGCTGAGCGCCGAGCTGGACCTGGACATCATCAGTCGCCTGGGGAACCTGAGCAAGGCCTTCAGCCACTGTCCCACACAGACTGCCGGACCTGGACTCATGCAGACCCAGAGCAGCGAGCTGTGCTCCTCCTTCACCCTTCTCTCCCCCCACGCCATCCTCAGGCTTCGTTTCCCCATACCCGACCTGCGGCCTCTCCCTAAGCGTCGACCTCCGACCCAGAGGGCAGTGCGGCAGGAGACCCTGGTGCTGGAGCTGACGGAGCTAGAGCTGAAGCACCAGGAGGCCCCGGACCTCCAGGCCGAGCAGACTGCCCCGGGACAGCCGTGGGCTCCCTGCCTCACCCAGCTGCTGGAGGCCTCCTTCTCCGACCTGCACGGGTCATACGAGGGCTGGGAGGGCGGCTCTTTCCCCTGTATCAGAGTGAAGAAGAACCGTGACTCTCCGCCGAGGATATCAGTACGTGTGCGTGGAGGTGAGACTCAGGGCCCGGCAGCAGGTCTGGGTGGGATGAACCTCATCAGGGACCTGGGGGCTGCCTTCTTTGAAAGTCACTGTGAACTCAACGACAAAACCAGCTCCCCATTTTCCTCCAACCGCACCATGTTTGAGACTGAGGAGATGGTGATTCCAGCCGACCCCGAGGAGATGCGTCAGTTTCAGGCGCAGTGTGTCGCTCAGTGTCAGTGTGCGGTGGACATCAACCTGCCGCTGGCCTACATCCTCCTGCCCAGCAAACAGGCCTTCCAGAGCTTCTACAACAGGATCAATAATGATCTGTTGATGTGGGAGCCTCCTCCCCCCTCAGCCCACAGCCCCGACCACAGCCGTCATCACCACGATGAGTTCCAGCTCTGCAAGTCGGCCTTTAGACTGGACTCTGATTCAGAAGAGGACGACCCTCAGTTCTACTTGGCCAGTGATTCATCTGGAAAGACACAACAGTCAGCTCCCCGGCCCAACCACAACCTCAGCCTCCTCTCCCTCACTGTGATTATCGGCAAAGGTCGTCTCCAAGCCAGAACAGACAAGAAGGAGGACCAGAGTCATGGGGAAATTGTGCTTGACCTGGAAGGGGGGAAGATATTCAGTGTGGCACAGCACCAGAACGACCCCAATCTCAATTTCCTGTGTCTAGAGAGCAGACGAGTGGAACTCTACCATCGAGCGGTGGTGAAAGACACCCCTATCCCACAGCGGTTGGAGATGCCCAACTTCACTCCCCCAAAACACTTGGACCCTACCATTTACCCCACAGAGGTGGGTGTGAGCAGTGTTGGTGGCAAAGAGGGGGAGTTACAGATGTTGTCCACAGCCATCAAAATCACACTGGACCCACAGAGGAGTGTTAAGGAGTTCCTAGTTGCCCTTCGACTTCAAGGTGCCACCATGCGACATTACGTGACGCAGACTAATCACAGCTGGCATGAGCAGCTGGTTGACTTCCTGGATGTCATTGATGATCCCATTCTGGGATACACAGCACCTGCCGTCATCACTGTCCTCCACACACACCTCGCTACCTGTGCCGTCGACTACAGACCTCTGTATCTGCCACTGCGCATGTTGTTCACAGCAGAGTCCTTCTCTCTGTCCAGTAATATCATTGTTGACACTGCCACCTTCCACCTCAGATTCATCCTGGATGACTCTGCTCTCTACCTCTCTGACAAATGTGAGAGCGACACAGTGGACTTGAGGAGAGACTATGTTTGTGTTCTGGACATTGACCTGCTGGAGCTCGCCATCACCACCTGGAAAGGCAGCGATACGGGCAAGCTGTCTCAGCCTCTCTTTGAGCTCCGTTGCTCCAACAATGTGGTTCACCTTCATACCTGTGCTGATTCCTGCGCTGCCCTGGTCAATCTGCTGCAGTACCTGGTCTCCCAGGGTGACCTGCACCCTCCACCACGACACACCTCACCCACCGAAATCGCTGGTCAGAAATTACCACTGTCAGAAAGTCCTGCGTCAGTGCTTCCCTGCCCTCCAGCTGAAACCGCTGAGATCAACCAGTATGACCTGGCTGATGCCTTAATTGACACAGAGAAGAGCCACCAAGAAGAGAGTTTAGATCCAGGTTCACCCTCCATGCCGAGGGGCTCGCCTGTCTCCGTATACCTGTTTCCAGGTGAAGCTCAGAAGCGCAGCCCCTCCGTCCTGCAGGGTGAGGACTCTGAGCTTGATGGACTGGTTGCCACAGCAATGGAGGCACAGGCAGATATGATGTCAGAGGAAGGCTCCGAGGGCTCCAGCGAAAATGACGACTTTTGCATCTTGGAGGCTCCCGGGATGGGCATTTCTCCCAGGGACGGGGAGCCTGTGGTGACAGTGTTGTCTCAGGGCCCCATCAGGGTGAAGGAGAGTCACTTCTCCAGGCCACGAGGCAGCTCAGACCTGCTCAGAGCCCCCAGCCGTTTCCCGGTGCCCCAGAGCAGGGTGGTGCTGCGGGAGATCTCTGTGGTCTGGCATCTCTACGGGGGCAAGGACTTTGGCAGTAAGCCCATGTCCATACATGCCCAGCACACAAACAgAGGTCGTTCCGTCCCCACTGGTGTTCGTGGGTCCCCGTCTCGCACTGTCGCTCCCTCTCGTCCCCAGAACTCCTGGCGCTGGGCCGGAGGCAGCGGTCGTCAGCACGCACTGCTGATGGAGATCCAGCTCaccaagGTGTCCTTCCAGCATGAGTCCTACTCGGTGGCAGCAGCTGGGCAGGATGGGGAAGGGTCAGTGGCGGTCGGGGTTGGTCCCGGTGGCGAGCAGCCACTCTCCAGGCAGGTGTTCATTGTCCAGGAGCTGGAGGTTCGAGACCGACTGGCCTCCTCACAAATCAACAAATTCCTCTACCTCTACACCAGCGAGAGCATGCCTCGCCGAGCCCACTCCAACATGGTGAGACAGCAGACagggaggacagacagacagacagagggagtttttaatttataaactacTGAACTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144112 lncRNA upstream 88759 23100041 ~ 23127134 (+) False flrt1b
TU144034 lncRNA upstream 218855 22950595 ~ 22997038 (+) False rom1b
TU144039 lncRNA upstream 257313 22958158 ~ 22958580 (+) True G107203
TU144024 lncRNA upstream 283731 22929269 ~ 22932162 (+) True G107191
TU144020 lncRNA upstream 289157 22925809 ~ 22926736 (+) True G107187
TU144140 lncRNA downstream 87 23237251 ~ 23237450 (+) True G107276
TU144215 lncRNA downstream 33635 23270799 ~ 23271221 (+) True G107334
TU144222 lncRNA downstream 45815 23282979 ~ 23285214 (+) True G107341
TU144221 lncRNA downstream 48199 23285363 ~ 23287678 (+) True G107340
TU144238 lncRNA downstream 82228 23319392 ~ 23320649 (+) True G107353
XM_039812872.1 mRNA upstream 1960 23201276 ~ 23213933 (+) False nxf1a
XM_039812873.1 mRNA upstream 1960 23201303 ~ 23213933 (+) False nxf1a
XM_039812869.1 mRNA upstream 1992 23200615 ~ 23213901 (+) True nxf1a
XM_039812871.1 mRNA upstream 1992 23201014 ~ 23213901 (+) False nxf1a
XM_039812870.1 mRNA upstream 1992 23202805 ~ 23213901 (+) False nxf1a
XM_039813066.1 mRNA downstream 1184 23238348 ~ 23243599 (+) True LOC120566542
XM_039812888.1 mRNA downstream 7287 23244451 ~ 23251375 (+) True trmt112
XM_039812889.1 mRNA downstream 7288 23244452 ~ 23251375 (+) False trmt112
XM_039812882.1 mRNA downstream 15591 23252755 ~ 23262261 (+) True tgfb5
XM_039813668.1 mRNA downstream 73572 23310736 ~ 23314230 (+) True zgc:162144
TU143997 other upstream 242132 22954972 ~ 22973761 (+) True G107168
TU143990 other upstream 350217 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1754443 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2863726 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 3154555 20043031 ~ 20061338 (+) False LOC120566323
TU144145 other downstream 21107 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 31627 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 217403 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 251137 23488301 ~ 23491358 (+) False LOC120566905
TU144290 other downstream 251137 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile