RNA id: XM_039812873.1


Basic Information

Item Value
RNA id XM_039812873.1
length 2365
RNA type mRNA
GC content 0.47
exon number 22
gene id nxf1a
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23200615 ~ 23213933 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGTGGTGCTACACCCAGGACACCTTACTTTGCACGGCAGATGGATCCTCGCAAGATATCCCGAGAATCGCATCTGGCACGTCAGACCGAGGGGACTTTATGGTGAGGAGAGAGGTCAGGAGCACTGGTTGCATGGTCATTGGAGAACATGATGATAGAACCGCACCACAGTTTCGCAACCGTAAAGGCAGAGGCTCACACAAGGGTCGGTCATATGACCGGTCCCGCAGAGACCGCCAAAGGGGAAGCCACTCTGGAGGCTTTGGTCCTGGGCCACGGTCTAGGCTTGATGATACTGATGCAGATGTGACTATGAGTGACAGCTCTCAGGACAACAGCTCCCAGCACAGATTCAACCCATATGGAAGACCTTTTCGGAAAGGAGGAGATGGGCGCTTTGACAGAGACAGACGACAAGGCAAAGGGGGAGTAggtggcagaggaggaggaggcggcttTAGAGGAGGAGACCGAGGTGGAGGCAATGGAGGAGGAAAAAGCCGGTCAGGCTGGTACAAAGTAACGATACCACATGGAAGAAAATATGACAAGAAATGGTTATTGACAGCTCTTCAGAACATCTGTTCGGTTCCCTACACACCTGTACAGTACCATGTTGACCATAACCGGGTCCATTTCTATGTGGATGATTCCTCTGCTGCCAATGCTTTGCACAAATGTTCTCACAAGATTACAGACACAGATGGTTATAAGGTGGAAGTGCACATCAACCCCAGCGCGCCACcatccttcctcctctctgacCTAAAGCCTGAACACTTGGAGCACCTGAAGCAATGCATGGCAAAACGTTTTGATGGCTCCCAGCAAGCACTCGACTTGAACAACATCCGAACAGACCCAGATCTGGTGTCCCAGAACATTGAAGTCATCTTAAATAGGAAGACGAACATGGAAGCTGTCATCAAGATCATTGAAGAAAACATTCCAGAGCTGACTGGTTTGAACCTGAGTAACAACCGTATTCACAAACTGGATGAACTTGCTGATTTGGTTACCAAGGCGCCTAATCTGAAGACCATCAACCTCTCTCACAATGAGCTTAAGTCAGACCGGGAGCTGGACAAGGTGAAAGGCCTGAAGCTGGTGGAGCTGTGGCTGAACAGGAACCCTCTGTGTGACCTCTTCAAGGATCAGGCCTCATACATCAGTGCTGTGCGGCAGAGGTTTCCCCGGCTTCTCAAACTGGATGGTCATGACCTCCCCCCACCCATTGGATTCGATGTGGAAACGCCCACCACTATCCCCCCCTGCAAGGGCAGCTGTTTTGGCTCTGATGAAATCAAGGTCATTATCCTTCGGTTCTTGCAACAGTACTACAGTATATACGACTCCGGGGATAGACAGCCACTCCTGGATGCTTACCATGATGGAGCATCGTTATCCCTCACAACACCTTACTCCACCCAAAACCCCTCCAGGAGCAGTCTGGGAGAGTATCACAAAGACACTCGAAACCTGAAGAGGATCAAAGACTCTACGATGCGTTTTCGACTTCTGAAGCACACACGACTGAACGTGGTGGCTTTCCTCAACGAGTTGCCCAAAACTCAGCATGACATCGCCTCCTTTACTGTCGACGTAAACACCTACACGAACACACTATTATCATTCACAGTGAGCGGAGTCTTCAAAGAAGttgCTGTTGATGGTAAATCCCGAGAGTCCACCATGGCTTTCTCTCGAGTTTTCATCACAGTCCCAGCAGGGAATTCTGGTGTGTGCATCGTGAACGACCAGCTTTTCATCCGGATGGCCACAACAGAGGAGATTCGCAGAGCCTTTGTTGCCCCCGCCCCAACTCCCTCTTCCAGCCCCGTCCCCACCCTCACTGCACCACAGCAGGAGATGCTCACAGCCTTCTCGCAGAAGTCTGGCATGAATCTGGAATGGTCCCAAAAGTGTCTGCAGGACAATGAGTGGGATTTTACCAGAGCGGCACAAATTTTCACTCAGTTAAAGaCTGATGGCAAGATCCCCGACGTTGCGTTCATAAAATAATTGAGTTGAATCATACTTCTGTGAAATAAAATCTGCAGTAATTTTATTTATGGCTTTTGTTTTATCCGTTACACTtttgacttttgttttattaaaaataatgtagATCAAGTTTACTATTTTGTTTTAACAGCCAATTGTTGACCTAAAGACTGATGTTATGATACCATTTAGGTAACCTTAGTTTTTGGTCATTCTATAGAAATCACTACATGTTAGGAATAAAGATATGGTCAGTGGTTTAActtgtgttgatgttgatttgttgtattatgttaaacaataaaaaaatattttgttacccAACTGATACATTTCACTTTAGCCACAATAAGAACAAAA

Function

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144112 lncRNA upstream 74169 23100041 ~ 23127134 (+) False flrt1b
TU144034 lncRNA upstream 204265 22950595 ~ 22997038 (+) False rom1b
TU144039 lncRNA upstream 242723 22958158 ~ 22958580 (+) True G107203
TU144024 lncRNA upstream 269141 22929269 ~ 22932162 (+) True G107191
TU144020 lncRNA upstream 274567 22925809 ~ 22926736 (+) True G107187
TU144140 lncRNA downstream 23318 23237251 ~ 23237450 (+) True G107276
TU144215 lncRNA downstream 56866 23270799 ~ 23271221 (+) True G107334
TU144222 lncRNA downstream 69046 23282979 ~ 23285214 (+) True G107341
TU144221 lncRNA downstream 71430 23285363 ~ 23287678 (+) True G107340
TU144238 lncRNA downstream 105459 23319392 ~ 23320649 (+) True G107353
XM_039812881.1 mRNA upstream 2348 23193164 ~ 23198955 (+) True si:ch73-22a13.3
XM_039812880.1 mRNA upstream 2348 23193164 ~ 23198955 (+) False si:ch73-22a13.3
XM_039812883.1 mRNA upstream 8250 23188036 ~ 23193053 (+) True LOC120566426
XM_039812884.1 mRNA upstream 8250 23188036 ~ 23193053 (+) False LOC120566426
XM_039812877.1 mRNA upstream 18369 23177706 ~ 23182934 (+) False zbtb3
XM_039812867.1 mRNA downstream 1960 23215893 ~ 23237164 (+) True atg2a
XM_039812868.1 mRNA downstream 1960 23215893 ~ 23237164 (+) False atg2a
XM_039813066.1 mRNA downstream 24415 23238348 ~ 23243599 (+) True LOC120566542
XM_039812888.1 mRNA downstream 30518 23244451 ~ 23251375 (+) True trmt112
XM_039812889.1 mRNA downstream 30519 23244452 ~ 23251375 (+) False trmt112
TU143997 other upstream 227542 22954972 ~ 22973761 (+) True G107168
TU143990 other upstream 335627 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1739853 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2849136 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 3139965 20043031 ~ 20061338 (+) False LOC120566323
TU144145 other downstream 44338 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 54858 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 240634 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 274368 23488301 ~ 23491358 (+) False LOC120566905
TU144290 other downstream 274368 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile