RNA id: XM_039812897.1


Basic Information

Item Value
RNA id XM_039812897.1
length 2038
RNA type mRNA
GC content 0.51
exon number 20
gene id slc30a9
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27396370 ~ 27408837 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCACTGTTGTGTCACAGGTCAggtcactgtgtgtgttgtttgcagCGTTACCATTAGTTTactctcgctttgccagaccctcctccaaagtttGACCATCTATTCTGAAATGGATACAGACTATGCAGAATAAACCTCACAACAGAAAGTTGACAAGCTAACCCAACAGTGACCGTGCTATCTGTGACCAAGCCCCGCTACAGCGAGGATGTTCCCCAGCCTGGCCCACAGACCATGGCATGTCTTCTGCAGGCTATCCTTGCAACACAGGGCGTCCCTGTCACAACGGTCCTCGAGGATCCCCCAGCTGTGCTACGGTTTTAAGAGTGGAGGCACACATAAGGTGTGGTTCTGCCTCCCAGACTGCCGTGTTGCTTCTCTAGGGCTGGCCAAGGTGCAGTACTACTCTACCTCTGGCAACAGTAAAGATGGTCCCTCAAAATCAGCATCAGGTGATTCTCCAACAGCAGAAAAGGTCCtgtctgctgctgcaaaagCCACCCCAGCACCGGAAGATGTTTCTGGTGCAACACCTCAGGGACTGACTAAAGCTGAGACAATTCAAGTGAAAGTTCGAGCAGTCCTGAAGAAAAGAGAATACGGAACCAAGTACACTCAGAACAACTTTATCACCGCAGTCAGAGCCATGAATGAATTCTGCCTCAAACCAAGTGATCTGGAGCAGCTTCGCAAGATCAGAAGACGCAGCCCTCACGACGACACAGAGGCTTTCACGGTCTTTTTGCGGTCAGATGTGGAGGCCAAAGCACTAGAGGTATGGGGCAGCCATGAAGCTCTAGCCCGAGAGAGAAATCTCAGGAAAGAAGTGGAGAGAGAGTTTCAAGAAAGTATTTTTAGGAATCAACAGTTGTTAAAGGAATACAAAGACTTTTGGGGAAACACTAAGCCTCGATCAGGCCAGAGGACAACTTTCCTACAAGGGCCGGGGAAGGTGGTCATGGTCGCTATTTGCATCAATGGGCTGAATTTCATCTTCAAGCTGCTGGCTTGGGTCTACACCGGATCAGCTAGCATGTTCTCAGAGGCCATCCACTCTCTGGCCGACACCTGCAACCAGGCTCTGCTCGCCCTGGGAATCAGCCAATCTGTCCGCAACCCTGATGCAGGGCACCCGTATGGCTTCTCCAACATGCGCTACATTGCCTCCCTCATCAGCGGGGTGGGCATTTTTATGATGGGAGCAGGCCTCTCCTGGTACCATGGCATCATGGGATTGCTGCACCCACAGCCCATTGAATCTTTGTTATGGGCTTACTGTATTTTGGCGGGCTCTCTGGTGTCTGAAGGAGCCACATTACTAGTAGCCATAAATGAGATAAAGAGGAGCGCCCAACTTCATGGACTGTCTTTTTATGAATATGTAATGCAGAGTCGAGACCCCAGTACTAATGTAGTGCTGCTGGAGGATGCTGCTGCTGTATTAGGAGTCATCATGGCTTCTGGCTGCATGGGCCTCACCTCACTTACAGGTAACCCCCTCTATGACAGTATGGGTTCTATCTGCGTGGGCACGTTGCTGGGCGCCGTCTCAGCCTTCCTCATCTACACTAACACAGAGGCTCTGCTGGGTCGCTCCATACAGGCAGAACGTGTACAGAAGCTCACCGAGTTCCTGGAGAACGACCCCGCAGTAAGGGCCATCCACGATGTGAAGGCCACTGATCTGGGACTGAGCAAAGTGCGATTCAAGGCTGAAGTTGACTTTGATGGCCGAGTGGTGACACGGTCTTATCTGGAAAAACAAGACATTGACCAAATCCTCAATGAAATTCAGCAGGTGAAGACCCCCGAGGAGCTGGAGAACTTCATGCTgaaacacggggagaacatcaTTGACACCCTGGGGGCCGAGGTGGACCGCTTAGAGAAAGAACTCAAGCAACGGAACCCAGAGGTCCGTCATGTAGACTTGGAGATACTATAATACCTTACGGGTCATCGTGCTGTAACAAGAAGAGGAAAAGGTGAAAAGGAGGGCCAAGCTTGCCTCCGctatctctcccccccccccccacc

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640565.1 lncRNA downstream 1653 27394324 ~ 27396031 (-) False LOC120567396
TU145500 lncRNA downstream 1701 27394158 ~ 27395983 (-) True LOC120567396
TU145476 lncRNA downstream 63610 27269370 ~ 27334074 (-) False atp8a1
TU145466 lncRNA downstream 144300 27252395 ~ 27253384 (-) False LOC120567151
TU145371 lncRNA downstream 306009 27091382 ~ 27091675 (-) True G108194
TU145586 lncRNA upstream 348956 27757793 ~ 27758695 (-) True G108351
TU145587 lncRNA upstream 363014 27771851 ~ 27772071 (-) True G108352
TU145588 lncRNA upstream 363839 27772676 ~ 27772981 (-) True G108353
TU145614 lncRNA upstream 377273 27786110 ~ 27786783 (-) False aurkb
TU145629 lncRNA upstream 428731 27837568 ~ 27839107 (-) True LOC120567057
XM_039813997.1 mRNA downstream 19563 27269601 ~ 27378121 (-) False atp8a1
XM_039812901.1 mRNA upstream 1727 27410564 ~ 27420419 (-) True gsr
XM_039812900.1 mRNA upstream 1727 27410564 ~ 27419827 (-) False gsr
XM_039812902.1 mRNA upstream 1727 27410564 ~ 27419671 (-) False gsr
XM_039812577.1 mRNA upstream 23504 27432341 ~ 27445047 (-) False LOC120566264
XM_039812576.1 mRNA upstream 23504 27432341 ~ 27445047 (-) True LOC120566264
TU145467 other downstream 135564 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 331737 27065418 ~ 27065947 (-) True G108191
TU145357 other downstream 396673 26989264 ~ 27001011 (-) True G108181
TU145230 other downstream 936977 26457995 ~ 26460707 (-) False rpl36a
TU145117 other downstream 2109598 25279603 ~ 25288086 (-) True G107989
unassigned_transcript_477 other upstream 370296 27779133 ~ 27779214 (-) True trnal-aag_2
TU145627 other upstream 429011 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other upstream 429011 27837848 ~ 27839107 (-) False LOC120567057
TU145691 other upstream 612900 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 3252075 30660912 ~ 30661623 (-) True G108777

Expression Profile