RNA id: XM_039812902.1


Basic Information

Item Value
RNA id XM_039812902.1
length 1900
RNA type mRNA
GC content 0.48
exon number 12
gene id gsr
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27410564 ~ 27420419 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCAACAGAGACGACCCGGTTCGACCTCCTGGTGATCGGCGGCGGGTCCGGAGGTCTAGCTGGTGCTCGGAGGGCGGCGGAGCTCGGAGCATCCACCGCCGTGATCGAGAGTCACAAACTCGGAGGTCAATGTTGGCTGTGTCCCTAAGAAGGTTATGTGGAATGCAGCCGTTCATGCTGAGTATCTTCACGACCACAGTGATTACGGCTTTGACGTTGGAAATGTTCGTTTCAGTTGGGAAGCTCTCAAGGCCAAAAGGGATGCTTATATTAGTCACCTAAATCGTATTTATCGCAACAATCTTGACAAAGCTAAAGTCCAAACTATTCTAGGTCAGGCCAGGTTTACCAATGATTCTGAGCCGACTGTGGAGGTGAATGGAAAGAAATATACAGCACCTCATATCCTTATCGCCACTGGAGGGCAGCCTACTGTTTTGAGTGATGCTGAAGTTCCAGGGGGAAGTCTTGGCATTACCAGTGATGGCTTTTTTGAACTTGAAACTCTGCCAAAGCGCAGTGTGATTGTGGGTGCAGGTTATATTGCAGTGGAGATGGCGGGCATCCTTTCCACCCTGGGGTCCAAAACATCCCTCATTGTTCGACAGACTGCAGTTTTGAGGAACTTTGACAGCTTCATAAGCACAAACTGCACTAAAGAACTGCAAAACTCTGGTGTGGATGTGTGGAAGAATTCTCAGGTGAAGTCCGTTTGTAAAACAGACAAGGGACTGGAGGTGACGATTGTCACCCAAGACCCCGAGAAGAAGAGCGACGAGGAGAAGATCGGCATCATCCAGGAAGTGGACTGCCTTCTCTGGGCCATCGGCAGGCAGCCAAACACTTCTGGACTGAACATCGGCGAGATGGGTGTGGATACAGATGAAAGAGGCCATATCATTGTGGATGAGTTTCAGAACACCAGCAGACCAGGGATCTACGCTGTAGGGGACGTTTGTGGCAAAGCTCTTCTCACACCTGTTGCCATTGCTGCAGGCAGAAAGCTAGCACACAGACTGTTTGAGGGCAAGAAGGACTCCAAGTTGGACTACTCAAGTATCCCCACAGTGGTGTTCAGCCACCCACCCATCGGAACGGTGGGCCTCACAGAAGAGGAGGCCATTAAATCTAGAGGAAAGGAGAATGTGAAGATCTACAAGACTTCTTTCACTCCGATGTATCACGCCATCACGAGCAGGAAGAGTCAGTGCATCATGAAGCTGGTGTGTGAGGGCAAGGAGGAGAAGGTGGTGGGCCTGCACATGCAGGGCCTGGGCTGTGATGAGATGCTGCAGGGCTTCGCTGTGGCCATCAAAATGGGTGCTACCAAAGCAGACTTTGACAAGACTGTTGCCATTCACCCCACCTCGTCTGAGGAGTTTGTTACAATGCGttaatacaaacacaaactctCCCCTTGCTTCCCTAGACGACTTGCAACCCACACAAGCATACCAGGACAGAGTCACTCCTCTGTACCACTCTCGCATCAGCTTGACAACTTGCTTTCTAAAACTGCATACTTCCATTTTCTCTCTCATTTAAGTGACCTTATTCGTGCACAGTGTTTCATCTTCTCTAATTTTTACCTAAATGGACCAAGACCGAGTTATGGCCTCCTTAAACTGTACTATGGGTCTTGAATATTGATCGAATATTCTGGATTCCATTTTAATGATTGTAAAAATGGAAGGGATGGATCTGCAGTTATTGATGTCAAGTGATTGCATGGGAAATCAAAAAGACTCTCCCCTAGTGTATGTGTTTGATTTGTCAGTTATTTGTTAGATGAATATGACAAACACTGCTGCTCCTTAAGGCACCTATTTACTGCAAGGTCATAATATATCGACTGTACTGTTTAAAGATTCAATAAACatgcatgattttttttcttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640565.1 lncRNA downstream 14533 27394324 ~ 27396031 (-) False LOC120567396
TU145500 lncRNA downstream 14581 27394158 ~ 27395983 (-) True LOC120567396
TU145476 lncRNA downstream 76490 27269370 ~ 27334074 (-) False atp8a1
TU145466 lncRNA downstream 157180 27252395 ~ 27253384 (-) False LOC120567151
TU145371 lncRNA downstream 318889 27091382 ~ 27091675 (-) True G108194
TU145586 lncRNA upstream 338122 27757793 ~ 27758695 (-) True G108351
TU145587 lncRNA upstream 352180 27771851 ~ 27772071 (-) True G108352
TU145588 lncRNA upstream 353005 27772676 ~ 27772981 (-) True G108353
TU145614 lncRNA upstream 366439 27786110 ~ 27786783 (-) False aurkb
TU145629 lncRNA upstream 417897 27837568 ~ 27839107 (-) True LOC120567057
XM_039812899.1 mRNA downstream 1727 27397684 ~ 27408837 (-) False slc30a9
XM_039812897.1 mRNA downstream 1727 27397684 ~ 27408837 (-) False slc30a9
XM_039812896.1 mRNA downstream 1728 27396370 ~ 27408836 (-) True slc30a9
XM_039812898.1 mRNA downstream 2194 27397684 ~ 27408370 (-) False slc30a9
XM_039814000.1 mRNA downstream 32443 27273170 ~ 27378121 (-) False atp8a1
XM_039812577.1 mRNA upstream 12670 27432341 ~ 27445047 (-) False LOC120566264
XM_039812576.1 mRNA upstream 12670 27432341 ~ 27445047 (-) True LOC120566264
XM_039812579.1 mRNA upstream 12670 27432341 ~ 27445046 (-) False LOC120566264
XM_039813232.1 mRNA upstream 59154 27478825 ~ 27481536 (-) True hs3st1
XM_039813234.1 mRNA upstream 285541 27705212 ~ 27735519 (-) True rab28
TU145467 other downstream 148444 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 344617 27065418 ~ 27065947 (-) True G108191
TU145357 other downstream 409553 26989264 ~ 27001011 (-) True G108181
TU145230 other downstream 949857 26457995 ~ 26460707 (-) False rpl36a
TU145117 other downstream 2122478 25279603 ~ 25288086 (-) True G107989
unassigned_transcript_477 other upstream 359462 27779133 ~ 27779214 (-) True trnal-aag_2
TU145627 other upstream 418177 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other upstream 418177 27837848 ~ 27839107 (-) False LOC120567057
TU145691 other upstream 602066 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 3241241 30660912 ~ 30661623 (-) True G108777

Expression Profile