RNA id: XM_039812930.1


Basic Information

Item Value
RNA id XM_039812930.1
length 3292
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC120566455
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19528422 ~ 19569097 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTtgcacgtatgtgtgtgtgactgcacATGGGCTTGAATTGATGAAGTCATAGGTCTTTATCTGGAGCactctgtttgtatgtgtgtgatggtgaatgggcgggtgtgtctgtgttttcccCCTCTTCTCCATCCCctctttctgtctgtaatgCTCTTGTGCTATTTCCACTCTTTGTCTCCAGCGCTCTTTCTGCCTCCCTCTTGCGCCATTGGCTGCACAGCTTtgcctcttcttctttctgccTCTCTTTGTTTGTCACATCGTTGCACTTTAGCAGGGATAGCCTTCCCTTTTTTCAGCTTCAGTGAgacaagagagggagagacaaagataGCAGCAactgaggaagaggagaataTACTCCAAACAAACAGGGAGAGTGCAGGTGGGTAAAAAAGAGTAGCTGTGCTTTTGAGAGAGAGTGGAGTATTTACAGAACGATGGAGAGCCAGTGAGGGAGAAGGAGTCAGTGTATGCTTCCCTGAGCAGGACACGGCAGGACTTTGCAGGAGGCTCTTCGGACCAGGCGAGCAAAGCAAAGAAATCCGACCGTAGAGGAAGATAGGGAGAGAAAAGGTGTAGCAGAGGttagaggagaaggaggaggaggagagggggaaggAAAAAGGGACAAGAGAAGGGGAAAAGGAGCcccagaggattaaaaaaaagaagaagaagagaggaggcaGACGTGAAGAGATTTACCCCCGGGTACCGCGGCGACAGGGCTGTAGCAATGTCACCGTGGTTTTGGTGCTAATGAGGCAAGGAAGTAATCGTCTGTAACGGGGCGAGCATGTCTGCTTGTGTCGTGGATAACTGCTCCTCAAAAGAAAGGGACTTTGCCTATGTGGCGAGAGACAAAAACACGCGGGTGCTGAAGTGCCACGTGTTCCGATGTGATACCCCTGCCGCAGCCATCGCCACAAGTCTCCACGAAATCTGCTCCAAGATTATGGCTGAAAGAAAAAGTGCCAAGGCTGCAGCTAGCAGCTCCTCCCAGACCGGCTCTGATGTACCCCTAcaagAGTTTCCCATGCCAAAGACTGAGTTGGTGCAGAAGTTCCATGTGCTGTATCTGGGCATGACGTCTGTGTCTCGCCCCATAGGTATGGACATCATCAATGGAGCCGTAGAGAATCTCCTGTCCTCCACAGGCAAAGAGGACTGGACTCCTGTCATACTGAGTATTGCTGACACCACACTGGCTGTCATCAAAGAAAAGgaagaggaagaggaggtgtTGGTGGAGTGTCGAGTCCGCTTCTTGTCCTTCATGGGCGTGGGACGAGACGTGCACTCATTTGCCTTCATTATGGACACTGGGAGCCAGCATTTCCAGTGCCATGTTTTCTGGTGCGACCCCAACGCAGGCAGTGTCTCTGAGGCTGTGCAGGCAGCATGCGTGctgCGGTATCAAAAGTGTCTGGTGGCACGACCGCCCTCCCAACGCGCTGGCTCCTCATCCTCGCCCTCTGCGGACACGGTGACACGCCGAGTGACCACCAGCGTGAAGCGTGGCGTCCAGTCTCTCATAGACACTCTGAAACCCAAGAAACAGCCATCGGAACTCCCCCAGCAATGACCGTCACCAGTGACCACGACACCCTCCCAGCCGACACCTCACACACGATCGCCACGGCAACACCTAGTCAGTACCAGCCATGGTAACCAAACGATGTACATACATGTTAACAAACACCACCGCAGATGAAGGAAAGAAGAACGATCCTCCAGTAAGCCTGATGATAATGAAAAACTATGACAAGAAAACAGATCTGTTTCATGAGGAGGAATGGAAAAGCTGGAAGTCACTGGTTGAACTTTGACCTTTGAACGCTGCTGTGTCCAAGTGGAAACCACCTGCTGGCTTCACTGGCCCTTACTTTATGTGGATTTATGGGACTGGATAAATTATTTGATGAAGCAGACAGGACACAGGACAACCCAGAAGAAAAAGATCACATTTCTATTAATAGCCTGGTCTATGGAACCACTCACTGGTTTACTCCCATTGTCTTTCATGCTCTGTCCCTTCCTGTTAAAACAGTCATCAGCACAGTGAGAGCGCCTGGACTGGACGCCTGAAACGCCAAGCTATGGACGCCTTCCAGGACAGACAAGGTGTCAACTTGCTGTCATGGCATTTTAACAGatgaataagaaaaagaagaaaaaaacaagaccaGACAGACAAGACCTGCCAACACGCTCCCTCCCACCAAATGGCATACAAATATTTTGATCCCTTCGATGTGTGTTAAGACTTGAAACTAACAAAAAATTCAACATCTCCTTCgaggatgaatgaatgaagtgaCTGTATTGATGATGTGTATGTAAATGACTGTACGTAGGAAGAGAGACTTTAGGGCACAGCAAATTGTAGATATAAGGGTGAGATGAAGTGTTGGCGACAAACGAGacagatgtgttgattttgcatGTTTTCTTGATGGgaagtgttttatgttgacgaGTTTAAAAAGGGTCTCAGTACTTAGCACAAGTCATCTCCACCTTACCAGGACTGGATTTACACTGGCACAAAGATCTGGCCTATTTCGGACCCACAGCTGAATAAAAGGTTATTCCCTGCCCCATTTACAGAATCACAATTTAGTCAatcaatgtatttttaattcCATTCCTTGATGTGTCGATCAGCAAAAGAAAGATAACCGTTTTTAAAGTATTTAGAAGCTTTTAATTAGTTAAGATTGTAATTTGTTAGCATATATCATAAAGAAACTGAGTTTAAAAGCTCAAGAATGTTACGTTGCTTATGTTCAGACTTAATAACAATTTCCTCAGGAATCTTTATGCATACACCCAAGATTTATGTGGCAGCAAGAAAGATGGCAGATGTGAGGCACTCGTGGCTTTCTGAACACTGGTGCACAATAGTGTTTCCCCTGCTTGGACAACATGGAAAGATCAAATATGTGCCACACAGTAAGGCTTAACTATATGTTCTCTTCATCAGTAAATCCAGCCAGTCTACTCCcacattctctcacacacacacattctctcacacacacacactctctaaatAAAAGTCTGCTGTCACTGCTATCAAAACCTTGATACTGCTCCTACGGCTCGTGGCCAGTACCTGCACTCCACATAAACTCTATGAATGCAGTCCGATCGAAatgaaaaagacacacacaaaaaaaaatacaagaaagATGCTGTAAATCATTTCAGTTCTGTTCTTCACTCATCTCTACACCATGTGAATGtaatctgttgtgacaataaatgcATTACCAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142770 lncRNA downstream 31341 19477168 ~ 19497081 (-) False G106303
TU142712 lncRNA downstream 78298 19399648 ~ 19450124 (-) True G106259
TU142749 lncRNA downstream 91505 19435840 ~ 19436917 (-) False tomm5
TU142713 lncRNA downstream 127927 19340494 ~ 19400495 (-) False G106259
TU142831 lncRNA upstream 301384 19857096 ~ 19857367 (-) True G106349
TU142887 lncRNA upstream 389943 19945655 ~ 20052690 (-) True G106378
TU142872 lncRNA upstream 406242 19961954 ~ 20007579 (-) True G106367
TU142882 lncRNA upstream 484385 20040097 ~ 20055141 (-) True G106375
TU142883 lncRNA upstream 495100 20050812 ~ 20055141 (-) False G106375
XM_039812919.1 mRNA downstream 45797 19477930 ~ 19482625 (-) True tlr1
XM_039812922.1 mRNA downstream 59014 19464471 ~ 19469408 (-) True slc25a51b
XM_039812915.1 mRNA downstream 91495 19435839 ~ 19436927 (-) True tomm5
XM_039812909.1 mRNA downstream 93227 19432316 ~ 19435195 (-) True LOC120566441
XM_039812911.1 mRNA downstream 102790 19414668 ~ 19425632 (-) False si:ch211-203d1.3
XM_039814393.1 mRNA upstream 13823 19569535 ~ 19577846 (-) False dele1
XM_039814392.1 mRNA upstream 13823 19569535 ~ 19577845 (-) False dele1
XM_039814391.1 mRNA upstream 13823 19569535 ~ 19577845 (-) True dele1
XM_039812994.1 mRNA upstream 42649 19598361 ~ 19698769 (-) True spock1
XM_039812996.1 mRNA upstream 42649 19598361 ~ 19698767 (-) False spock1
TU142773 other downstream 45864 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 309278 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 837012 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1222727 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1536551 17987258 ~ 17991871 (-) False sfxn1
TU142874 other upstream 416703 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 675196 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1572126 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2234541 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 2563973 22119685 ~ 22120067 (-) True G107015

Expression Profile