RNA id: XM_039812936.1


Basic Information

Item Value
RNA id XM_039812936.1
length 7909
RNA type mRNA
GC content 0.47
exon number 35
gene id atrx
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17679700 ~ 17723014 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATGCGCCATTTTGCTGCGTCCACAGCCATCCGGCAAGATGGTCCCCTTGCTTTGTCTCCCCTGACCGGAGTTGTTTCTGTATTCTGAGGCTATACTTGTTTCCCCGCAATCGAAAATCTGCAAATTGGATAGAACAGGGTAACCTGTAACAAAAACTAAACGTGTCTGTGTCCGTCAAGAAATGACGACGATGAAAAGCAGTGAAGTGTATGAACTACACAGCAGACTGGATTCTCTActcagagtgacggctgactcatcgTGAACAGGTCCAGTGCGGGTTGAATTCACATTGGCAGGTCACCTGCGTTATATACGTCCCGTGTATGAAAGGTAAAATGAGTCTGGCTTCTTCTGAATCACACCTAGaccaaatgtcagaaaaagcagaGGAGCCTGGTAGCTCAACAGAAACTATGAAGCCTTCCTCTTCTCGCAACAAGAGGAAGCCCGCCACTGTAGCTAAGCACACTGAACTGAATGAATCGGATGCCTCAGTCGAGAGTGAAAATGAAGGGGCCACTTCTGACAACCCGTCAGACAATAACGCAAGCAGTGTATCTAAAGGCACTTTAGTGATGAGGCCATCTGGGAATGAAAATAAAGGCGCCATGAAGCTCAGAGTGGattttaaacagaaacatacagATGATACCCTGCAGAAGAAAGTAAGCTGCACTGCCTGTGGAAAACAAGTAAACCAGTTTCAGCGGAACTCTGTGTATGAACATCCTGCACTCAAAGTACTTATCTGCAAGTCATGCTACAAGTATTACACAAGTGATGACATCAATAGAGACTCTGATGGGATGGATGAGCAGTGCAGGTGGTGTGCTGAAGGGGGCAAGCTCATCTGCTGCGACTACTGCAACAACGCCTTCTGCAAGAAGTGCATCCTGCGCAACCTGGGCAGAAAGGAGCTGTCAGTAATTACTGATGAAAACTCAAAGTGGCACTGCTATGTCTGCAGGTCAGAGCCCCTCCAGGATCTGGTCTCCAAATGCCACCGCATCATGGAAAAACAAGAACTCAAGCAACGAAAACCGGAAAAAAACGAGGAACGTGAAAGCAAGAGACACAAGAACAAAATGGTCAAAGAGCACAAAGCAGTTGTCAATGGGAAAGAACATACCGAAggttcagggaccatgacgttCTCTTACAAAAAACTGCAGGTACCCAAGGAACTTataaagaaagcaaaaaagctTGTTGAAACAACAACTGGTCTGAACAATACATTCATCCAGTTCATCCAGCAGGCAGCCGAGGAGCAGGGAGATAAGTCTATCAGGTACCGGCATTTAAAAGCCTTCAAGGCTGTGCTTGCTGATTTGAAAAAAGCCCACAGTGCTTTGGAGGAGGCTTTGGGACCTGaatttaaaaacatggagtTGCAGAATGGTAATGAAATGCAACATATTGTGAGAAAGAGCATAAATATCGTAGCCCCTGAGGAAAACGACCACATGGATAATGTGGCGGATGCAGATGATGCCAACACAGAAGAGAATGTTGACGCAGAACAGGAGGCTGATATAACCGAGGAGGCTGACGTAGAAGAGGAGGCTGACGTAGAAGAGGAGGCTGACGTAGAAGAAGAGGCTGATGTAGAAGAGGAGGCTGATGCAGCAGACGAGTCGGACAAGGAGCAGCTTAATGAGCAGGAGGTGAACAATGATCAAGTGTCAGGTGAGACTGAAATGAAAGACAACCAAACAAAAACTGATTCACCCAGAAAGACAATCAAAACGGAAGAATGTGATGATGGGCTTGCGTCAGCTGGTGAAATGTCCCTAGATCAAGACATTATGTCTGTGCCTCCTTCGGTTCCTGAAGAACTTTTTCAGATGGTGGAGAGTCTTGCGGATTCAACCATGCTTTCACAGACTGACACCAATGTGGTTACAGGTGCTAATACAAAGTCAAATGGAAACTCAACAGCCTCTCAACCCACCCAGCCCAAGGTGAAGAACCTCATAGTCAAACTGACTCCTGTACCAGTTGTGACGACACGTGGGTCCAGGTCCTCCAGgtccaaaaacaaagaaaaagacggagagatgcaaaaaaaatgtgaagaaaaatGTGAGAAGGGAAAAGATGATGCTTCTGATGCAGTAGATGGGACAGACAGCCCACCACCAAGCCGTCGCTCTAGTAGACTGAAGACCACTCCCTTGAGAAAGCAGGCTGAGAAAAAGAGCAAGGAAGAATCCTCTGAGTCAGAGTCCGAGGAAGATAAGGTCAAGGCCAAATCTTCCAAGAAATCCAGTCGCGCCAAAAAAGAGGATGGGGAGGAGGCCAAGGATTCCGAGAAAAAGACGGTGGATTCTGACTCGGACGAAGTTCCTAACATACTGCTGGAGAAAGCTGCAGCAGGCCACAGCACAGATGAGGAACAGGGGACCACAAGTGCTAAAAAGTGTTTATTCAAACTAAACAACACATCCACAAAGGATACAGACAAAGCATCCAAACGCAAAAGGAAATCTGAAAGCTCTGATTCAGACTTGGAGAACAAAAGCAAAAAGACctccaagaagaagaagaaacagaatAGCTCAGACTCCACCAACTCCGACTCTGACCAGGAGAAGGAGACAAAGAGTAAAGCGGCCACAGCGAAGAGGAGATCTAGCCGTGTGAAGAAACAAGATGAAGCAAAAGAGGAAGACAGAAACTCACCTGAGAGAAAGGCAACCAGGGGGAGAAGGTCTTATGAAAATAAGCGCAAGGGAAGGAGCCCCAAAGCCACCTCCAAGCTGCAGTCATCCTCCagtgaggatgaggaggagcagCCGGCTGAAGGTGACTCCGGAGAGGACAGCGACGAGCAAAAGATCAAACCCATTGTGGATGATAATGTGGTCGGAGGAAGTGGACCTTTCCATCAATCCTCAGGAGATGAAGAGTGCGATAAAGAAAAAGTATCTCAGGTTTGTGaagatgatgacgatgatgatccTGAAAACAGGATTGCAAAGAAAATGCTTCTCGCccaaataaaatccaactactCTTCTGGAGCAGAGAGCTCCTCTGATAATGAAGGAGCAGATAAGGACGAAAAGTCCTCcaagaaagttaaaaaagaggaggatgaagatgaagaagaagaagaagagcaacAAGACAAGGATTCAGAAGACTCTAGCTCTGATGTTGAAGTGAAGAAACGCGGCAGACGCCACAAATTGCTTCGTCATAAACTCTCGCTGAGTGAGGGTGAATCAGGAGAGGAGCAAGCTGCCAGTaaagagaagaagaacaagaagaagaaagTGGGCAGCGATGACTCTTCAGACTCTGACTTTGAGAAGTCAGTAGAGTCCAGTGAAGAGTCGGGGATAAGCGAGGAGCTTAGTGAATCAGAGAACGAGGGAAAGCGCCGCAAGACCAGATCTGCAAAGAAGAAGGACCAGGAGAAACCAAGAAGTTACAAGCAGAAGAAGAAGCGACGCAGGATCAAAGTTCAGGATTCCTCTTCCAGCAATGAGAAGAGTGGAGAGGATGATGATGACCCAGATGGAGAAGAACGCAAACAACGCAAAAAGATCCGCAAAATCCTGAAGGACGACAAGCTGCGGACAGAGACGAGAGATGCtctaaaagaagaagaggagaggaggaaacgtATAGCTGAGAGAGAGGCACTCAGGCAGAAACTTCGAGAGACGATTGTAGTGGAGGAGTCTTCCCAGATGAACTGTCCCATCACCACCAAGCTAGTGCTAGATGAGGATGAAGAGACCAAGGAGCCGCTGGTGCAGGTGCACAGGAACCTTGTCACAAAGCTCAAACCTCACCAGGTTGACGgGGTGCAGTTCATGTGGGACTGTTGCTGTGAATCTGTGAAGAAGATCGAGAAGTCTCCTGGCTCCGGCTGCATCCTCGCCCACTGTATGGGTCTGGGGAAAACTCTGCAGGTGGTGACATTACTTCACACTTTGCTGCTTTGTGAGAAGCTCAATTTCTCCACAGCACTGGTGGTTTGTCCCCTGAACACTGTCCTTAATTGGCTCAACGAGTTTGAGAAGTGGCAAGCAGGAATGAAGGATGACGAGAGTTTAGAGgtATCTGAGCTGGCCACAGTTAAGAGGCCACAGGATAGAGCATACGCCCTCCAGCGATGGCATGATATGGGTGGAGTAATCATCATCGGTTACGAAATGTACCGAAACCTGACGCAGGGCAGGAACATCAAGAGCAAGAAGCTCAAAGAGACCTTTCAGAAGACACTGGTAGATCCAgGTCCAGACTTGGTGATCTGTGATGAAGGACACATTCTAAAGAATGAGGCGTCTGCTGTGTCCAAAGCGATGAATTCTATCAGGACGAGGAGGAGGGTTGTGCTGACTGGAACACCTCTGCAAAACAACCTTGTTGAATATCACTGCATGGTGAACTTCATCAAGGAGAACCTGCTGGGGTCAGTTAAGGAGTTCAGGAACCGCTTCATTAACCCCATTCAGAATGGTCAGTGTGCCGACTCCACACTACAAGATGTCCGGATCATGAAGAAAAGGGCTCACATCCTCTATGAGATGCTGGCCGGCTGCGTCCAGAGGAAAGATTACACGGCACTCACCAAGTTCCTGCCTCCTAAACATGAGTATGTGTTGTCGATCAGAGTGACCCCTATCCAGTGTAAACTATACAGATACTACTTGGAGCACTTCACAGGTGTGGGGAATGCTTTGGAGGGGAGCCGTGGCCGCGCAGGGACCAAACTCTTCCAGGATTTCCAGATGCTCAGCAGAATCTGGACCCATCCCTGGTGCCTTCAGCTGGACTACATCAGTAAAGAAAACAGGGGTTTCTTTGACGAGGACAGTATGGATGAGTTCATCGCTTCAGAAACGGAAGAATCCTCCATGAGTATGACCTCTGAGGATGAGAGgacgaaaaaGAAAAAGAAGCAAGGGaagggaaaaaagaaaggaTCTGATGACTCGGACAGTGATGACGTGGAGGTCATCAAGGAGTGGAACACCAGCTCTCGGGGCAGAAATGGAGAGGGTCGAGTTAGACCAGAGCCTGTAGAAGAAGCTCGGCCCACTAGCTCAGCACCAGGGAGTCCAAATCCTGACTGGCACAGGGACTTTGTCACTGATGCTGACGCTGAGATCCTGGAGCACTCTGGAAAGATGATGCTCCTCTTTGAGATCTTGCGCATGGCAGAGGAAGTAGATGAAAAAGTGTTGGTGTTCAGTCAGTCTCTTATCTCTCTGGACCTGATCGAGGATTTCCTGGAGCTGGCTTGCAGAGCTAAAGATGAAGAAAAAGTCTCTCCATACAAAGGTGAAGGCAAGTGGTTCAGGAACATTGACTACTATCGCCTGGATGGCTCCACCAACGCCACCACCAGGAAGAAGTGGGCTGAAGAGTTTAATGACATAAGTAATCCAAGAGGTCGTTTGTTCCTCATTTCAACGCGAGCTGGCTCTCTTGGCATCAACTTGGTGGCAGCCAACAGGGTCATCATCTTTGATGCCTCATGGAACCCCTCCTATGATGTCCAGAGTATCTTCAGAGTCTACCGTTTTGGCCAGTTGAGGACTGTCTATGTGTACAGGTTCCTGGCCCAGGGTACAATGGAGGAGAAGATTTATGACCGGCAGGTAACCAAACAGTCTCTGTCATTCCGTGTGGTGGACCAGCAGCAGATTGAGAGGCACTTCACAACGAACGAGCTGGCTGAGCTTTACACATTTGACCCGGACATGCTGGATGGTCCCTCAGAGAAGAAGAGCAAGAAAGCCACGCCCTTGCTTCCTAAGGATCCCTTCCTGGCGGAGATGCTGCAGAACAATAAGGACCAGATTGTGTGTTACCATGAGCACGACTCCCTGCTGGACCACAAGGAGGAGGAAGCCCTTAGCGAAGAGGATCGCAAGGCTGCCTGGGCCGAGTATGAAGCAGAGAAAAAGGGTGTGTCGATGAGGACCAACTTCCAGTCTGCATACCCCCAGATGGATATGGGCTCCTCCAACTACTTCTCCTTTAACATGGCGGCTTTGGCCTCCATGACCAACCAGCAGCTGGAGGAGCTTATAAACCAGGGACGACATAAAGTCATTGAAGCAACAAATGCATTGAAGACTCTATCACGCGAGTCACTGGAAGATACTATCGCCAGATTgTGGAAGGAGAACCCAGCACTCACAGAGAATCAGGTCCAGTCCATGGCTCTGGGACGGCAGGCCACGGTGGAGCTGGAGGTCAAGCGCAGGGAAATCGCGTACCGGGACGTTCTCACCAGGCAGCAGACGCTGATGATGTACGTGCAGAAGCTGATCACCAACAGGAAGGTGCAGGAGCAGCAGATGGCCATGGCTAACCAGGCCAACTACCTGAACCAGCTGGCCATGCAGAACGGCATGATGGGAGGTGCAGGGCTCAGCCAGATGGACCTGCTGGGGCTTTACCAGCAGCTCCACGGCCTAAACTCCCATCAAGGCATGGGCAAGAATCCTGGGCCCTCCAAGGGCCTGTAGGTCAGAGGGACTCTTCCTCACCCCCCACTCAGCCAGCCAGCTCCCAGTGGGCCAGTCCAAGTGAGGCCAAGTTCTCTGTAACAAACACACTGTGACACCACCGCTCAGAGCTCAAAGCAATCTGGTGCACCAAGCAGAGGGTGGAGTAGTTTTTGAGACTAGGCTGCAGTCCACTGGGGCCTCAAGTGGGATAGACTCAGTTCTGCATTCTGTAGTTCACTAAGAGAAGGTGGAATATAATGTATAAATGACTGTGTGAAAGGAGTCTATTAGGAAACAGAAAAAATGTATATACCGCCTTAATGTTATTCAAGTTCTATATCTTCATTTTTCATGTATTTAAAGAAACTAATTTCACCCCCAATGTTTTTAAGCATTGCATTGTTTTTCTCTTGAAAGATGGTTTCCTTATTATTTAAACTTGGTTTTTTATACTATTTCAAATGCATAACTAAACCTGAGTGGGACCAGTGTCGTGGTGACAGGACTCTATTATGTAAAGCTCTACATGATTATTAGCCCCAGTAGATTACTTTACCAATATCTAGTAAAGACGGCAGCTAATGGAGCTGCCAAGTCCTGCTCTTTTTGGGAGATAGAAGAAATTGATAAGTcgacaaaaacagacaaaaaaaatatagccttatattcttttcctaaaaaagaaaaaaaaaaagaaaaaagctctGTAAAGTTTTGAGATTTGTTGAGAATCTTTTCTATTATGCTTTTAAGTGTTTTTCATTAGTTGTCGCTAAACATGGTAATGGAATGCTTGTGTTGTTCAAAACTGCCTGCCGGTTCCTATGAACTTTTTGTAACATCATCCTCATTGTCACGTGTTGTCTAGCATAGCACTGTGCGTCCTGTTCATTGTTTATGTTCCACTTGTGTTGATCCCAAGCTTGGGTGAGTAACTGGGTCCCACAAAGCACAACCAGTTCAGCCAGATATCATAGGGCCCAAAAtctttccctttactttgtcaAAGTTTGAAGTATGTGTCTCGTGGTGGATTTGgtagaaagagtaaagaagGAAATCTTCTACATCTGGCTGATTTGTGTCCTCTGCTTTGTGAGAAATGCCTTCTGGACACTAGTCTCACCAGGCAGGCCCCCAGACTATACCTGTATTCTACTTTGGCACATTTTTGCTTCTAAATGCTTAAACTGGTGTAGCTGTTAATCAAGAGGAATATGTTCATTTCTCACAAAGAGATGTCTCTAGTTGACTCCTGTGTTTGCACAAGgtgtatttcataaatgtagaGAAACTTTTTTGCCCTCCTCTAAGAATGTTCTTATGTTAGCAAATACACCAACATGATTTGCCATGAATCTGATCTGCTATTATCTTGATAAGTATTTAATATAACATTTAATAAAGTGACCAAAAGGATGAGCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K10779 ATRX; transcriptional regulator ATRX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141792 lncRNA downstream 343748 17334404 ~ 17335952 (-) True G105597
TU141793 lncRNA downstream 354745 17324460 ~ 17324955 (-) True G105598
TU141778 lncRNA downstream 511942 17166988 ~ 17167758 (-) False frmpd3
TU141770 lncRNA downstream 526107 17152171 ~ 17153593 (-) True G105578
TU141757 lncRNA downstream 528132 17142146 ~ 17151568 (-) False tmsb1
TU141942 lncRNA upstream 6577 17729591 ~ 17730694 (-) False kif3a
TU142017 lncRNA upstream 32200 17755214 ~ 17755915 (-) True G105749
TU142028 lncRNA upstream 105608 17828622 ~ 17831148 (-) True G105759
TU142018 lncRNA upstream 134070 17857084 ~ 17859686 (-) False LOC120566288
TU142039 lncRNA upstream 151822 17874836 ~ 17876295 (-) True G105768
XM_039813798.1 mRNA downstream 49803 17625557 ~ 17629897 (-) True zdhhc15b
XM_039813799.1 mRNA downstream 50059 17625557 ~ 17629641 (-) False zdhhc15b
XM_039813797.1 mRNA downstream 61153 17587676 ~ 17618547 (-) True abcb7
XM_039813793.1 mRNA downstream 101889 17522141 ~ 17577811 (-) True nexmifb
XM_039813794.1 mRNA downstream 101889 17524783 ~ 17577811 (-) False nexmifb
XM_039813689.1 mRNA upstream 6539 17729553 ~ 17748547 (-) True kif3a
XM_039813834.1 mRNA upstream 26649 17749663 ~ 17769267 (-) True sh3rf2
XM_039813835.1 mRNA upstream 26649 17749663 ~ 17769264 (-) False sh3rf2
XM_039814419.1 mRNA upstream 60546 17783560 ~ 17795391 (-) True LOC120567448
XM_039813412.1 mRNA upstream 111703 17834717 ~ 17843371 (-) True LOC120566774
XR_005640507.1 other downstream 101889 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 528132 17142146 ~ 17151568 (-) False tmsb1
TU141625 other downstream 716226 16957662 ~ 16963474 (-) False rab9b
XR_005640433.1 other downstream 1004845 16592908 ~ 16674855 (-) False gria3b
TU141311 other downstream 1811845 15866067 ~ 15867855 (-) False hnrnph1
TU142030 other upstream 60546 17783560 ~ 17795223 (-) False LOC120567448
TU142092 other upstream 264244 17987258 ~ 17991871 (-) False sfxn1
TU142254 other upstream 580255 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 964774 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 1492975 19215989 ~ 19219144 (-) False LOC120566717

Expression Profile