RNA id: XM_039812942.1


Basic Information

Item Value
RNA id XM_039812942.1
length 2102
RNA type mRNA
GC content 0.48
exon number 3
gene id tsc22d3
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22375266 ~ 22408211 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCACTCACAGTTATGGCTGCATATCCAGAGGTATCGCCAGCACACCAGTCAATGGTCTCTTTGTGCTTTGAGAAAACAGTTGTTGAGAACAAACAACAGCAGAACAGGGAGCAAACAGTCAAAGGGCCCCTGGCTCTTGAGCCTCATTTGGAAGCCAAGATGGGACACTCTCAGACGCGTCCCACTGTTGGGGCTATGCCACCCTCTCCCAGGACGGTGTGCGCCCTCCGCCTGGCCGAACCATCCCACAGATTCTGCTGCCACTACCAGCACTTCAGCTATCCTGAGAGAGCTATGAGCTACTCGCCCCCTTACTCACCGAGTCTGTTTAAGAGGCCAGAACGGCGTGCCTCTGGTGCTAGCGTTGTGGCCATCGACAACAAGATTGAACAGGCGATGGATCTTGTCAAGAACCACCTGATGTATGCGGTGCGTGAGGAGGTGGAAGTCCTCAAAGAGCAGATCAAAGAGCTGGCGGAGAAGAACAACCAGCTCGAGAGGGAGAACTACTTGCTGAAAAACCTGGCCAGTCCAGAGCAGCTGGAGAAGTTCCAGTCTCGCATCCCGACGGACACGCTGTTACCCCTGGACAATGTGAGCTCCCAGGTGACCGTAGACCAGCATCAGCCCTGCAGCCTCAGCACTGGCTCTGCTGTATAAGTGGCTCTGCCTTGGGGCGGGCAGAGCCACTGTTTCTTTACAGTAATGGACCTCCATTTGAACGTAAGCGTTACAAAAATCGCCGCCGCCGAGAAGCCTTCGTAACCGTGAAGGTGACGCATCGGGGCTGTAAATGATCGATGGGACACAAAAGAACTGTTGACATTGATAAGCACAAACAGAACTTAGGACGCTCTGACTGGTGCGGTGTCAGGCCCGTCCTCTGATACCGTCCAACTCTTTTGTCGTAGTCTCTCTGTGTAGACCAAAGTGCTACGAATAGAGAGAGGGCCGGCTAGACACCGAGCGCTCGCTTTCAGACCGCAAGGGGGCTTTCCCTGCCCTCCAACAAACACCCTCTGCTCCagagagtggggggggggtgaggaGGTGTTGATTGGGCTGGCCCTGGCGCTGCTAACTTGGAAAGTGTTGGGGAGGGTGCTCCCCACTCACCCAGAGGAGACCCGTCTGAGGTGGTCCTCCATGTCTCAACGAGAAAAGCCCCATCGTGTGGATTTGTCCGACCTCAAAATACAAGTTTCAAGGACTCCCAGCCACACATTTCAGCCACATAATGAGGACTTTCCTGTACCTATAATGTATGTGTTCATGTACATTTAAGCATAACAAGAATAATCAACCGAATAAGCTAAGGCAACAGGTGGAGGTTAATGCAGCATAGCCTATTAGAGCTGGTGGACCGCTGCAGTAGACTGATGAGTAAAGTGTAATGATTCATAAAATGTAATCTCATATTGCCTGCTGTTGGGGCTTGCTGCTTATGGGGGAATTAATCCAGCTATgtcttctgttttgttttttttgtttgtgattcTGAACAAAAATCAGTTGTTTGTAAAATAGGAGTATTGAGTGGTCTTacaagatttttattttaaataatcttGGGACAGGCATATCTGCCTACCTTGTCTGCCTAGCTCTTCACAGTAAACGATAACTACAATGTACATAAAGTTGAAACGTCCTGAAGTCAACATAGTGGAGATGGTGAGCAAGCAGAAGCCAGCTTTGTTGCTGCAGATGCACTTCTGATTTTAGCAGCGTCATCCAATATCTGTCGGTTTCTTGCTCAGATGCCAACTTGATAACGATGGCATGACAACAGTGCCTGTCCTTTTTAGTAAGAGAGGAACAAATTTCCACACTGAGCTCTGTTGTTTTCTAGCTACCAAAGActtttagccttttttttttttttttttttctttttttttctcacgacAACAGAAGCTGAGAAAACCAGGACCATGTGTATAACTTCACAGGGAGAAGTCTTGTATGTAGCTAGTGCgaaagtttttgtttgttttgtaaagATAACGGTATTGTTGCTGTAACGTATCCTCAAAGTTGTTCACTATGGTGTTTGGATACAACTGCACATTTGCAATAAACCTTATGTTTACATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143811 lncRNA downstream 62228 22312806 ~ 22313038 (-) True G107022
TU143809 lncRNA downstream 63423 22311620 ~ 22311843 (-) True G107020
TU143781 lncRNA downstream 494405 21880637 ~ 21880861 (-) True G106994
XR_005640545.1 lncRNA downstream 517405 21854408 ~ 21857861 (-) True LOC120567355
TU143778 lncRNA downstream 575263 21798223 ~ 21800003 (-) True G106991
TU143848 lncRNA upstream 71049 22453589 ~ 22478458 (-) True LOC120566740
XR_005640457.1 lncRNA upstream 71331 22453871 ~ 22478452 (-) False LOC120566740
XR_005640456.1 lncRNA upstream 208320 22590860 ~ 22592246 (-) True LOC120566739
TU143866 lncRNA upstream 210120 22592660 ~ 22594881 (-) True G107070
TU143869 lncRNA upstream 218600 22601140 ~ 22605668 (-) True G107072
XM_039813572.1 mRNA downstream 359513 21884772 ~ 22015753 (-) False pcdh11
XM_039813571.1 mRNA downstream 359513 21884772 ~ 22015753 (-) True pcdh11
XM_039813573.1 mRNA downstream 359516 21993813 ~ 22015750 (-) False pcdh11
XM_039814152.1 mRNA downstream 678183 21692687 ~ 21697083 (-) False si:ch211-175m2.5
XM_039814151.1 mRNA downstream 678202 21692687 ~ 21697064 (-) True si:ch211-175m2.5
XM_039814009.1 mRNA upstream 336354 22718894 ~ 22743071 (-) True slc16a2
XM_039814021.1 mRNA upstream 395865 22778405 ~ 22783217 (-) False LOC120567161
XM_039814020.1 mRNA upstream 395865 22778405 ~ 22783217 (-) True LOC120567161
XM_039814022.1 mRNA upstream 396366 22778906 ~ 22783217 (-) False LOC120567161
XM_039813978.1 mRNA upstream 447870 22830410 ~ 22840569 (-) False dpf2l
TU143804 other downstream 255199 22119685 ~ 22120067 (-) True G107015
TU143775 other downstream 584541 21790253 ~ 21790725 (-) True G106988
TU143328 other downstream 1244296 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 2141342 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 2394133 19972415 ~ 19981133 (-) False fgf18a
TU143931 other upstream 308620 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 608447 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 747169 23129709 ~ 23134785 (-) True G107284
unassigned_transcript_471 other upstream 778319 23160859 ~ 23160930 (-) True trnaw-cca_10
unassigned_transcript_472 other upstream 778848 23161388 ~ 23161459 (-) True trnaw-cca_11

Expression Profile