RNA id: XM_039812960.1


Basic Information

Item Value
RNA id XM_039812960.1
length 5535
RNA type mRNA
GC content 0.51
exon number 23
gene id sh3tc2
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 311932 ~ 336042 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGATAGCCTCTGTAGCGctcaaaggcacacacacacacacacacacacacacacacacacagaaacacacacatgctcacaaaCTCTCAGTGACTTACACACTCttactttctgtttttctgtttctgctCTCCTGTGCTTTTGGGTTGACAGCGGAGAATGACAGCGGTTTCGGCAGCTGTCATGAGATGCAATTCACCAGTTAAATGGTGAAACCACCCAACCacccacactacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacatacacatacacatacacaaacttaCATAGATACACACTCATTCTGCCACGCACATGAGGAATGAATTGAGAGGGGAGAACTGGCAGCAACACAGAGGTCTGTCCCAGCCCGCTCTCTGCGCTACTACTGTACATGTACGGTACATGCCATGAGACGGACCGCTACATTCACATAGACAGGAGCATAGCTCTAATACACAACATGGGTAACACACTTAGCCAAGAAGACATCTCTCCTGCTGAGCTGGATGCTCTTTGGAGGGAACCACCATATGCTCTCGGGGGAGCAAATGAACACTTctcaggaaatgacatcatgactcAAGGTGTTGTTGAGGAGGAGGACGGTCCGGTGGTGGAGTCAGGTGAAGGAGGGGTGGAGCCTGACAGCTACTGGAAGAAAAGAGAGGCCTTCCTCAGAGGAAGTACTGTCACACTGGGAGAGAAATTCTCCTCAGAAATTGTGCTGCTGTTCACCGGGCGGAGGCGCTCCAGCGTGGATCCTGACCGGGCCCTACAGGAGGCACTGCGCACCCGACTGCGGGTGGTGGAGAGCAACAGCCAGGATGTCATCCAGCTCTTTAAAGACTTGTCTGCACGTCTGGTGTCTGTCCACGCTGAGAAGGATAGCTTCGTACTCACATTCAAGACTGTGGAGGAAATCTGGAAGTTTTCAACTTACCTAGCATTAGGTTATGTTGCTCGCTGCTTGGAGAACTTCCTGTGTGATCAGTCCTTCTGGCTGGACCCAGAGCTGCTCAGTGACCTGCAGATCAATGTAACTGTGGACGAGGAACATTTGGCCACCCTTTATCTGGGACTGTTACTCCAGGAGGGATCCTTCTTTGCAAAGGCGCTATTCACAAGAAGTGAGCAGGATGAGGACAACGAAGAACAGCTGTCATTCAAAAAGAATGACTTGCTGATGGTGAGGGACACAGGGCAGGACGATATGTGGGAGGGCACCCTGCTCTCCACAGGAAACCATGGCCTGGTGCCAGTCAACGCCATGCAACCGCTGCCTTACCCCTTCTATCAGTGGTTCCTGAGGAAGTACCCAGGCAATGTTGGATGTTCGCCAGCAGAAAAGGAACCGTTTGAACATGCTATTGTGATGGGTTCCTGTGTAGCAGTGGTCGACTACAGTCCAGTGGGCCCCGATGAGCTTCTGCTGAGTCAAGGGGACATTGTGGAGATCCAGGGTCAGCTAGTCCGAGGCCTTGACATGTTCATAGGAAAACACACTTCCACAGGGCACAATGGTTTCGTACACAAGGCCCATGTCAAACCTCTGGACACCGTACCCCTAGACAGACAGTTGGTCTTTctgactgaggaggagagagccaGCCTGGCTCAGGTTAACCTGTGTAGCTCTGAGCCAAGTGACAGCGGCCTGCTGGAAAGACTCTTCTCATCTGACATCAGCTCTGTGTACAGGCTAGACAGACTGGATGAGACTGACTTCATGTACATCAGAAATCGTCCAAAACATGATCATAAGATTCCTGCAAGCGCCCGTCAGAGCATCATGTCAGAGAAAAGTGGAGGGACACCCCCGTACCACTCCTCTCCTCGAGCCTCTCTGTCTTACTCCTCCCCTCGTCTGTCCCTCTATCAGTCCCATAATCCTCTGCCACGCGAGGGAGAGCGCCTTTCCTTCACTCTGGATGACACATTCAGAGAACTGGACGAGTTCCAGGAAGACCCACCTCTCTTCTTGGAGGAGAACAGCTGGGAGGGGGAGGACTCCGAGTTCAGTGATCCCACACTGACCCTGCTCAACCATGAACACTTCCAGGAGGACTTGCTGCCCCTGTACGACCTGCAGTATTCCTTCCTGTGGGTGAACTTTAGTGGTAAGACTGAGGACGAGCTGCCAGGGCACCTAGAGAGTGTCAGGGAGTGTGCCAAGAGGATGGGCTTGCACTGGGCACATCGACGGGCATGCTTCCTCCTGGGAAGACTCTGCGCCCGGAAGCTAAAGTTCTCCCAGgCCCGTGTGTACTATGAGGAGGCTCTCAGTGTCCGCGTGGACAGCTTCTCGGACACGCCGCTCCTCGTCGCTCTCTTCACAAACCTCACCGCTGTCTACCTGAAGCAGCGTATGACAGACAAGCTGCCCCAGACTCTGGAGAAGGCCGCTGCCCTGCTCCTCTGTCTGCCCTGCCACACCTTCACCTCCACGGACGAGGTTGAACTGCTGCAGCTGCTCCTGAGGAGATCGGTGGTGATGGGGGACAAACACCTGGAGGCTCGCGTCTGTTACCTCATCTCCAGCCTCTTCCTGCTCCTCAGGAAGACTGAGGACGCTCTTCCCTTCATTGAGCGACTGCAGTTTCTCTCAAGGACGCTCTCTGCCGCCGAGGGACTTCCCATAGTTCCTTTGGACCTCAACTGGCTTTTGAGCTGGCTATATCATCGTAAATACATGCCTTACTTAGCCCTGGCCTCTCTGAGTCTAGACTCAAGACAAGACCACTCCCTCCACGATGCTTTCCTGAGGATTGAGTTGTTTATCAGGAACTCTGTTCGCCTGAACCCGTGCTGGAAGGAAGGAACCTCCCTGCTCCCTGCCCAGATTGTGATTTACCTTCAGCAGGCCCTGATTATAGCTAAGCAAGGGGAGGACATGAAGACCCAGAGGGACCTGTGTCTGGGCTTGGCCACAGTCTACCAGCAGTATGGTGCTCTGGATGAGGCAGTGCACTGTGCTCAACAAGCTGTGGAGACAGGAGGCCACATCATTGAGGAGGAGGGCTTTGAGGCCTCTGTGCTGCTCGGGTGGCTGCTGGTGTTGACGGGCCAGGCTGAGAGGGCCCAGAGTGTCCTACAGCCACTGCTCACATCTCTCCAGGGCACAGACAGTCCCACACAGCGAGGAGTGATCCACAACCTCTTGGCTTTGTGTCTGAGGCGGCAGGGCCGCATCCCAGAGGCAGGCTGGCATCTCCACTCTGCCTTGGTCATCTCCAGGGAAAGTGGACACCAGAGGAACCAGGCCCTGGCATTGGCCAATCTGGGCTGCCTGGCACTGGATGTGGGGGCATCTTTGGTGGCAGAACGCTTCCTGGTCAGATCCCTGCATCTTTTTCTGGAGCTCTGGGAAAGCCCCACAGATGAGGAGCACGTTCAGGCCTACCTTTGGCTGGGGCGGAGCTACAAAGACAGGAAGAAGAGTCAGGACAGCAGGGCGTGTTATGAAATGGGGTTACTTATTGCGCTACATGCCAAAAATTTACACAGTCAGATGGTGGTGGCCAAGGTGCTGAGTCGGCTGTATGCTGACTTGATGCTGTATGGCCAGAGTATCGTCTACTACgagctctgtgtgtctgtatccaGAGAGCTGAAGGACAAGAGACTGGAGGGAGAGTATCTGGAAATCCTCAGCAGCGTCTACCTCTCACTCAACACTGAAAGATCATCTCGTAAATCTCTGGACTACACCAAGCAGAGCCTGAGGATTTCTATAGATTTGggcaagagagaggaagagtcaGAGACGTGGCTGCAGGTGGGACGCATCTATTACCTCATCCAGGAGGACGAGCTAGCTGACATGTACCTGCAGGCAGCAGTGAAGACAGCCCTGAGGATGAATGATCATCACTTTGTCATGAGCATCTACGAGGAGGCAGGAGACGTCTACTTTAAAGGCCTCAGGAACCGCATGGCTTCACTGCCTTTCTACAGGGACGGCAGTCTGCCATTTGCACGGAGCATCAAGGATATCCATTCAGAGTTCCGTTTGTTGAGTAAATTGACGGAGCTGTTAATGAAGCAGGGAGAGCAGGACGAGGCTCTGCAGTACGCAATCCTGGCTGTTGAGATCGCCAGCAAAACAGcTGTGCAGTTGAATGAGAGGACAGCCTACCACCGGCTGGCTACAGTCTACTACAGCCTGCAGCAGTATGAGATGGCAGAAAACTACTACCTGAAGTCCCTGTCCCTCTGTCCGCCCGTCCTGCAGGACCCCATGGAGGCTCGCTACTACACCAAGGTGTACTGCAGACTGGGCAATCTCACTCTACACAAACTGAAGGATTCTTTTGATGCAGTGGGCTACTTCCAGTTAGCTCTGGCAGCGGCCGTGGAGGACCAAGCTAACCCTGAGGCTCTGTATGTGGTGTACATGAAGCTGGCTGAGATCCACGGAAACCACATGCCCGATGCTCAGCTGTGCCAAGTTTACAGAGACAGAGCTCAGAGTCTGAAGAGACTTCTGGCTGGACAGGAAGGCGCTGCTGTTGGAGAGGAAAACATGGAGGATGCAGACACAGAGCCTGGCCaaaagaaggaggaggactCTGATGCTGATATGGaacataggcctactgaaaGTTTGGTTAAGAGAACAACTGAAAATGAAACATGCGAAGATAACTCAATTCCAAGAACTTGTATAATCCATGGAGATACAGAGGATAGATGTGCCGACACTAATATTGGAGATGTGAACAGGAAAGAAGATCACAACATTAATCTTGATACAGATGGCCCTTTTATGAACGCCTTTGGGTCTGAGACAGAAACCATTGCCAGTCAGTCGTACAGTGACAGTATTCTTACTGAGTCCTTTGATACAGCCAAGGAGGATATCTCAGACTCCAGCAGCTCCACTGACACGTTACAAACATACCAGAATCAAACAGATGGGAAAGACTTTGATACTGATCACGGCATGCCCAGTCCAATACCTGATAATTACACCGGTGACATCATAAGACACACAGACGCCCAAAACACAGATTCTGACATTCAGGATGAACAAAACACAACCGCTAAAGAAACAGATGTGCATGCAGATCCTCTTTAAAAAGATGCTAGTGGTGAGGACAATCAGTCTCATAGACACTGATAAAGCTGTAAGactggtgacacacacacacacatacacacacacacacgcagtgaACACATGGTTTTTGATGATGTCTACACGTAGTCTCTCAGTGGTGCTTTATGTTCTTCACTGACATTTCCTCAGTCTGGTTTCTTGACCAACACATTGACTCCAACGTTCCAGCCACATGGCACTTATTGTAGGAAAGATGAAGTTTTTTTTAGAGATCTAGTGACATTAAAGCATGTGCCTTTTCTAAAATATGTTCTGTGATTATTACAGTGCATTTTGCTTGTATGTGTTTTctaaatgtatgtttttgtatctCTGGAAGATATGACTCAAACATAaagaatgttattttgtttgctGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640572.1 lncRNA downstream 80476 230377 ~ 231456 (-) True LOC120567446
XR_005640573.1 lncRNA downstream 82493 227228 ~ 229439 (-) True LOC120567447
TU137700 lncRNA downstream 101490 210129 ~ 210442 (-) True G102273
TU137655 lncRNA downstream 244919 65234 ~ 67013 (-) True G102240
TU137657 lncRNA downstream 244919 65501 ~ 67013 (-) False G102240
TU137748 lncRNA upstream 47407 383449 ~ 388245 (-) True G102309
TU137794 lncRNA upstream 130373 466415 ~ 468450 (-) False tmsb2
TU137796 lncRNA upstream 152256 488298 ~ 488647 (-) True G102341
TU137798 lncRNA upstream 164426 500468 ~ 500682 (-) True G102343
TU137800 lncRNA upstream 222689 558731 ~ 559029 (-) True G102345
XM_039812730.1 mRNA downstream 115491 193931 ~ 196441 (-) True il12ba
XM_039813786.1 mRNA downstream 124582 136595 ~ 187350 (-) False ebf1a
XM_039813783.1 mRNA downstream 124585 133516 ~ 187347 (-) True ebf1a
XM_039813785.1 mRNA downstream 124586 133516 ~ 187346 (-) False ebf1a
XM_039813784.1 mRNA downstream 125436 133516 ~ 186496 (-) False ebf1a
XM_039813817.1 mRNA upstream 87891 423933 ~ 429855 (-) True LOC120567031
XM_039812562.1 mRNA upstream 109591 445633 ~ 447959 (-) True foxi3b
XM_039812560.1 mRNA upstream 116046 452088 ~ 456219 (-) False lcp2b
XM_039812561.1 mRNA upstream 116046 452088 ~ 456044 (-) True lcp2b
XM_039813891.1 mRNA upstream 122578 458620 ~ 460571 (-) True LOC120567087
TU137703 other downstream 80488 220592 ~ 231444 (-) True G102276
TU137926 other upstream 502919 838961 ~ 841546 (-) False insb
XR_005640447.1 other upstream 1845001 2181043 ~ 2197917 (-) True sh2d1aa
XR_005640435.1 other upstream 2556377 2892419 ~ 2898545 (-) False pabir2
XR_005640589.1 other upstream 2560129 2896171 ~ 2896313 (-) True LOC120567496
TU138946 other upstream 3566949 3902991 ~ 3925309 (-) True G103268

Expression Profile