RNA id: XM_039812973.1


Basic Information

Item Value
RNA id XM_039812973.1
length 3250
RNA type mRNA
GC content 0.45
exon number 10
gene id simc1
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18935651 ~ 18951533 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaatatgcacacaaaaaacaggAAGTATCACATTTCAGATGTGCCAGTGACAGTTGAACCGAAGATTTTCTACAActtctagctagctatatcGCTTCATACCCGTCTCTGGTTGAATCAAACATAAGGACGTCATGTTACGGATGTTGTTTTTCCGATGTAACAATAGTTTAGCTAGTTGTAAGATAGCTTACGACAGTTAACTTGCGGCGTCCCGTGAATTATGAAGATACAATCATCTTCAAAGCCAAAATATTACCCAACATTAGGTGTTGAAGTTTCTGTCTCGTAGGAGAAATGGATGATGTGATCAGTCTCAGCTCCGACAGTAATGACTCTGATGTGGAAATCATCGGCTCCTTCTGTAACGTTATGACCAAAAGTGATCCACTGCCCCTCACAGCAGTGCGAGTTGACGTTGATGCCGTCAACGTCAACGTTCCAACGCTTTATATTGACCTCACAAACCCTAGATGGACTCTTCCAGAGCTGAAGATGTGCAAAAGACAAAATGCCAGTGTCTTGACAGTGGTAGACTTGACTGAGACCGACATAGAACATGGGACAAATCAGGAAACAGAGAATTTGCCACCAGATGACTCTCAAGTGAAAAAAGcacaaagtacaaataaaaatcaaacTTCAAACAAACAAGATTTAAAGTTACAGAAAAGCTCTTCAAGAGGCCCAACTGATTTTGCACCACAGCAGGACTGTGGCAATTCAAAGCCGAAGCAGAGATGTTTGGCTTCTCAAACACAATACGAAAAGCAGAAGGTTAAAGCACGTCTTCATGCAGCAATTGTAAAATTAAGACGATTGCCTTTTCTTGAAACTCATGTCGCAGAACTGAGGAAGTCAAGGTGTTCTGTCTATTTAAACAAAGATGGTACACAAATGTCACTGCACCCTAGTCAACCAGATAATAACACTGAAGCACCGGAATGCATTAGTAATTTGAGTAGAACTACCACATCAAATGGTCCTCCCATGGATCACTCACTGGATGAGTCTTCTCCTAAGGTGGTTGAATCTCTTGTCAGACAGGAAGAACAAGAGAACAGTAATGAATTTACAAACGCACAGTTAAATGCTAAAATATCTCCGCGTCTAAGGAGCCCAGCTGACTCTCCCCCTAAAGAGGTCTCTGTTGCAACCTCAAAGACGCACATCACTCGTGAAGAAGAGAGGGATGACGTTTGCTTATCCACGCTCATCCCCTCTCCAACATCACCGTCTTCATCTCAAGATAAAGCGCAGGGTTCTTTACATAAAGAAGTCCTCTGCTCCACACTGGAACAACTGGAATTAGACAAAGCAGATCTCTCTGATCCCTCATTCCCCCACTCTCCTACCACTGGACCAAACCCTTCTGAGCCTATTGGCCTTGACTCTATGTCTCACCAAGTCGACCCGACACCCACTTCTGAGCATACACTAGCAGAGAGTACATCTGAATGGCAGTTGGAGGAGGTTAAGGCTCATGAGCCGTCAAACAGCTCTGACTTCTTCTTTCTCCCTAGTGAACCTCCTTTGTCAACTGAGAACATGGATGACAGATCTGGGGCCGGGACAGACAGAGGGGATCTGGGCATTGACAGTCCAGTGTCTTTTCTTTGGCAAGAAGAGGGGAGTGATGGAGACGAAGACAGCAAAGAGAGCAGATTTGATATAGACTTCAGGGCGGCCAGTAGGGAGGACAGGCAATTTGTGTGCCCAGTTACACTCAAGAAAATAATGTCTGGACCAGCTCAAGCCCTGCTTGATGGGGAAGATGAAGATTTTGGAACTCCAGAGGTGCTTTGCCGTCAGAGTCTGAGCCTGGTTTACAGTACCATCGATGAGAACTACCCAGAGGGCACTTTGGAGCTTTTGTCTGACCTGCTACAGCCTGGTTACTATCCCCCCAGAGATATCACCTCCCACCTGCTGCGTGGCATTCTGCTCAACCCACAGTGTCCTTATCACCTGTGCGTGCAGGCTTTTAATCTGCTGATGAGGACACAGAGACTCCACATGGCTGATAAAACCACAGTTCCATGGGAATGGGAGTTGTTGACCTCAGTCACGTTCAATCAGGACCATACAAAGAGACATCGATGTGAGGTTGTGCGAATGCTCTTGGACTATGTCGTGCAGACTTTGGAGGATGACTTCCAGGCCAACCGCTCTATCTCTACCCTCCACCACTCCATCGCCAAGGCAACATTGTCATGTGATCAGCAGTTCCCTCACGTCAGGGATGTCATCAAGTGGCTCTTTTTTGCCATTATAAAATCAACAGAGCATGGGGAGAGTAAAGAagcagccagagagagagatgaacacAACAGAATGGTGTCCATCTTCCAGAGGATGCTGTCCTTGGCTCTGGAGGTGGACCGTTCTCCAGCTCTAAACTCTGCCAAGCTGTCCCAGGAGCTCTTCCATATGCTCATCAGCGATGTACCTTTACGAGCACACagGATGTTGTTACTGGAGAGCCTGCAGAGCATGCTGCTGAGATGTAAGCTGTTGGAACATCTGTTAGATTATGCATGCCCACTGAAAATCTCTCTGCCCATGTCGCTCAGTCTTCTGCTTCACTTTTTGAAGAACTGCACTCTGGCACCAGACCCTTCGGATGGTACTGAAAGGTGGCAGAGGTGGGAAGAGTTGGTCCATCTTCTCTGGATGTTGCTGCTCAGTTACAACAAAGCGATGAAAGGCTATCTGTGCAACTCAGTCTCTGAACAAAGAGGCGGAGTTGGCAACTTGGTCTACAAGCCGGATGATATGGTATCCAAGCCTGCCATTTGTGAAGCAGTGGAGGCTTTTCTGTCCAGATCCCAGGCTGACCTCGGCCAAGCCTTACCTCTCCATGTGGAAGAGTCCCTCACTTATCTACAGGATCATCTGCTAGATGTCTGTCAGTgttgaattgaaaaaaacttttcttgAATAAAGAAAGCATTAGCTATAAAGCATTGTactaattatatttatatttttgtatgaGTTGACTtgttaaatgtttgtgtttgtgtaaagtTCATTGTGGGGTCTAATGGAATTAAACAATATTTACATTTGGCTTCTCTTAATTATTTAAACTGTCAAAGGGCCTCcatgaggaccacaatggaaataagcctTCAggatttattgtgtttttatccctgttgatttttttaatgttggcTTATGTAATTACTGCTGTGCagtgttatttgtgtttttaaatcaaataaatgaatcaaagAAACAAGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142426 lncRNA downstream 206619 18710042 ~ 18729032 (-) True G106057
TU142304 lncRNA downstream 383967 18550110 ~ 18551684 (-) True G105967
TU142250 lncRNA downstream 621250 18285958 ~ 18314401 (-) False reep2
TU142139 lncRNA downstream 867195 18067449 ~ 18068456 (-) False LOC120566360
TU142128 lncRNA downstream 899894 18035382 ~ 18035757 (-) True G105835
TU142435 lncRNA upstream 47008 18998540 ~ 18999875 (-) True G106066
TU142437 lncRNA upstream 50240 19001772 ~ 19002114 (-) True G106068
TU142448 lncRNA upstream 66220 19017752 ~ 19018811 (-) False rgs14b
TU142450 lncRNA upstream 95732 19047264 ~ 19047863 (-) True G106073
TU142451 lncRNA upstream 97842 19049374 ~ 19055694 (-) False G106074
XM_039812972.1 mRNA downstream 1212 18915363 ~ 18934439 (-) True cnot6a
XM_039813617.1 mRNA downstream 27356 18706095 ~ 18908295 (-) True LOC120566918
XM_039813621.1 mRNA downstream 71394 18707287 ~ 18864257 (-) False LOC120566918
XM_039813619.1 mRNA downstream 95753 18707287 ~ 18839898 (-) False LOC120566918
XM_039813620.1 mRNA downstream 95825 18707287 ~ 18839826 (-) False LOC120566918
XM_039814450.1 mRNA upstream 50980 19002512 ~ 19015339 (-) False slc34a1b
XM_039814448.1 mRNA upstream 50980 19002512 ~ 19015339 (-) True slc34a1b
XM_039813337.1 mRNA upstream 66220 19017752 ~ 19044951 (-) False rgs14b
XM_039813335.1 mRNA upstream 66220 19017752 ~ 19044951 (-) False rgs14b
XM_039813336.1 mRNA upstream 66220 19017752 ~ 19044951 (-) False rgs14b
TU142417 other downstream 244241 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 629956 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 943780 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1140428 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1357840 17522141 ~ 17577811 (-) False nexmifb
TU142573 other upstream 264457 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 528486 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 1020883 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1279376 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 2176306 21127838 ~ 21130970 (-) True G106728

Expression Profile