RNA id: XM_039812989.1


Basic Information

Item Value
RNA id XM_039812989.1
length 3484
RNA type mRNA
GC content 0.51
exon number 22
gene id ogt.1
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17008128 ~ 17024727 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTCCAAAGCAGCTTTGTTGTGAAGAGAAGCCAGTCTGAACCATAAGCAGCGGCACATTTAATGCCAATATAAATCTAGCGGTTAGAGAGTGTAGCGAGGTTAGTTGGTTAACCAGCTAAACTGACGTTATACATGGACCACTGCTAGATCTTTATTAAGCGTTGTACGGGAAATCAAAGATTAGGGTGACGTTAGCTAAATTGACGTTAGCTACTTAGCTTGCCTGGCAACGTGTTTGCTAGTCAAAGATTGGTCGTCGCACATTTTTCTCTGAAACTGTAGTCTTATCAGAAGACACGTTGACGACCACAGTGCAAGACACGAAGACTGAGGAGATGGCGACCTCAGTGGGAAACGTGGCTGACAGCACAGAACCGACAAAACGTATGCTTTCCTTCCAAGGGTTGGCTGAACTGGCGCACCGGGAGTATCAGTCCGGGGACTTTGAGGCAGCTGAGCGACACTGCATGCAGCTATGGAGACAGGAGCCTGATAACACAGGCGTGCTGCTGCTCCTGTCCTCCATCCACTTCCAGTGCCGAAGACTCGACAGGTCTGCTCACTTCAGCACCTTGGCCATCAAACAGAACCCAATGTTGGCGGAGGCCTACTCCAATCTGGGGAACGTCTACAAGGAGCGTGGACAACTGCAGGAGGCCATAGAGCATTATCGCCATGCTCTGAGACTGAAACCAGATTTTATTGATGGATACATCAACTTGGCAGCTGCTTTGGTGGCTGCAGGGGACATGGAGGGAGCAGTGCAGGCTTATGTGTCTGCTTTACAGTACAACCCTGATCTTTATTGTGTGCGTAGTGACTTGGGCAACTTGCTTAAAGCCCTTGGGCGCTTGGAAGAGGCTAAGGCTTGTTACCTGAAAGCCATTGAGACTCAGCCCAACTTTGCAGTGGCTTGGAGCAACCTGGGCTGTGTGTTCAATGCCCAAGGAGAGATATGGCTGGCCATACACCATTTTGAAAAGgCAGTGACTCTGGACCCAAATTTCCTAGACGCATACATCAATTTAGGAAATGTTTTGAAGGAAGCCCGCATCTTTGACCGAGCTGTGGCTGGATACCTAAGAGCCCTGAGTCTTAGCCCCAACCATGCGGTTGTCCATGGAAACCTGGCTTGTGTCTACTACGAGCAAGGCCTCATTGACCTGGCTATCGACACCTACCGTCGTGCTATTGAATTGCAGCCCCACTTCCCCGATGCCTACTGCAATTTGGCAAATGCTCTGAAGGAGAAAGGCAATGTGTCTGAAGCAGAAGAGTGCTACAACACAGCCTTGCGTTTGTGTCCAACCCATGCAGACTCTCTTAACAACTTGGCCAATATAAAGCGTGAGCAGGGCAACATTGAGGAGGCCGTCCAGCTCTATAGGAAAGCACTAGAGgTGTTTCCGGAGTTTGCAGCAGCTCACTCTAACCTTGCTAGTGTCCTCCAGCAACAGGGAAAACTCCAGGAGGCCCTTATGCACTACAAGGAGGCCATCAGAATCAGCCCCACATTTGCTGATGCCTACTCAAACATGGGCAATACACTGAAGGAAATGCAAGATGTACAGGGAGCGCTGCAATGCTACACCCGTGCCATCCAGATCAACCCTGCCTTTGCTGATGCTCACAGCAATTTGGCCTCTATCCACAAGGATTCTGGAAACATCCCAGAGGCCATTGCATCTTACCGCACAGCCTTGAAACTCAAGCCGGACTTCCCTGATGCTTACTGCAATTTGGCACATTGCCTACAGATTGTGTGTGACTGGACAGATTATGACGAGCGGATGAAGAAGCTTGTGAGCATTGTGGCTGACCAGCTGGATAAGAACCGCTTGCCTTCAGTGCACCCACACCACAGCATGCTGTATCCACTCTCTCACGGATTCCGCAAAGCCATTGCTGAACGCCATGGAAACCTTTGCCTGGACAAGATCAATGCACTGCACAAACCTGCTTTTGAGCATCCGAAGGATCTGAAGGCCAGCGGTGGACGTCTGCGTGTTGGCTACGTCAGCTCTGACTTTGGCAACCATCCTACTTCCCATCTGATGCAGTCCATTCCTGGAATGCACAATCCTGAGAAATTTGAGGTTTTCTGCTATGCGCTGAGCCCTGATGATAGTACCAACTTTCGTGTGAAAGTGGTAGCTGAGGCTCATCATTTCACAGACCTCTCACAGATTCCTTGCAATGGCAAGGCAGCTGATCGTATTCACCAGGATGGAGTCCACATTCTGGTCAACATGAACGGATACACCAAGGGAGCCCGAAATGAGCTGTTTGCCCTCCGCCCTGCCCCGATTCAGACTATGTGGCTGGGTTACCCTGGAACCAGTGGGGCTCCCTTCATGGACTACATCATCTCTGACAAGGAGACATCCCCTTTGGAAGTAGCTGAGCAGTATTCAGAAAAACTGGCTTACATGCCCCATACTTTCTTTATCGGAGACCACGCCAACATGTTCCCTCACCTCAAGAAAAAGGCAGTGATTGATTTCAAATCTAATGGACACATCTTTGACAACCGCATCGTGCTTAATGGTATTGATCTGAAGGCCTACTTGGACAGTCTGCCGGATGTGAAAGTGATAAAGATGAAGTGTGACAACAACCAGGAAGCTGCTGGGGACACAAATGGAGCTCTGACCATGCCCGTAATCCCCATGAACACAGCAGCCGAAGCCATCATCAACATGATCAACCAAGGCCAAATCCAGGTCACAATCAATGGCTTCACTGTCAGCAATGGCCTGGCCACCACACAGATCAACAACAAAGCTGCCACTGGGGAGGAGGTGCCACGCACAATCGTTGTGACAACCCGCTCCCAGTATGGTCTCCCAGAGGACTCCATTGTCTACTGCAACTTTAACCAGCTCTACAAGATTGACCCCCCTACTCTTCAGATGTGGGCTAATATCCTAAAGCGTGTGCCCAACAGCGTTCTGTGGCTTCTCCGCTTCCCTGCTGTCGGCGAGCCCAACATCCAGCAGTATGCCCAGAACATGGGTGTGCCTGGCTCTCGCATCATCTTTTCTCCTGTGGCCCCCAAGGAGGAGCATGTGAGGAGGGGCCAGCTGGCTGATGTGTGCCTCGACACACCTCTGTGCAATGGTCACACCACAGGCATGGATGTTCTCTGGGCTGGAACACCCATGGTCACCATGCCAGGTGAGACCCTTGCCTCCCGCGTGGCTGCCTCACAACTCAACTGTCTGGGCTGCCCTGAGCTAATAGCCCAGAGTCGTCAGGATTATGAGGACATAGCAGTCAAACTGGGCTCTGACATGGAATACCTGAAGATGGTTAGAGCACGTGTTTGGAAACAGCGAATCTGCAGCCCTCTTTTCAACACCAAGCAGTACACAATTGATCTGGAGAGGCTCTATCTGCAGATGTGGGAGCACTATAGCAATGGCAAAAAGCCAGAACCTCTGGTCAAAATCCACTCGGTAGAGACCAGCGAGAGTGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141562 lncRNA downstream 253572 16755336 ~ 16755558 (-) True G105443
TU141554 lncRNA downstream 319825 16689083 ~ 16689305 (-) True G105436
TU141553 lncRNA downstream 320540 16688056 ~ 16688590 (-) True G105435
TU141551 lncRNA downstream 321401 16687479 ~ 16687729 (-) True G105433
TU141519 lncRNA downstream 412832 16524356 ~ 16596298 (-) False gria3b
TU141733 lncRNA upstream 27778 17052505 ~ 17055622 (-) True G105549
TU141766 lncRNA upstream 93024 17117751 ~ 17118234 (-) False G105577
TU141769 lncRNA upstream 93024 17117751 ~ 17118264 (-) True G105577
TU141767 lncRNA upstream 93100 17117827 ~ 17118234 (-) False G105577
TU141755 lncRNA upstream 117419 17142146 ~ 17151568 (-) False tmsb1
XM_039814299.1 mRNA downstream 1736 17001410 ~ 17007394 (-) True gcna
XM_039814300.1 mRNA downstream 1740 17001410 ~ 17007390 (-) False gcna
XM_039812717.1 mRNA downstream 13581 16989817 ~ 16995549 (-) True nsdhl
XM_039812714.1 mRNA downstream 20131 16971172 ~ 16988999 (-) False znf185
XM_039813409.1 mRNA upstream 73805 17098532 ~ 17113581 (-) True kctd12b
XM_039813169.1 mRNA upstream 93738 17118465 ~ 17125904 (-) True znf711
XM_039813171.1 mRNA upstream 93738 17118465 ~ 17125903 (-) False znf711
XM_039813170.1 mRNA upstream 93738 17118465 ~ 17125903 (-) False znf711
XM_039813172.1 mRNA upstream 93738 17118465 ~ 17125902 (-) False znf711
TU141625 other downstream 45656 16957662 ~ 16963474 (-) False rab9b
XR_005640433.1 other downstream 334275 16592908 ~ 16674855 (-) False gria3b
TU141311 other downstream 1141275 15866067 ~ 15867855 (-) False hnrnph1
XR_005640446.1 other downstream 1390022 15604604 ~ 15619108 (-) False tspan17
TU141106 other downstream 1874394 15133530 ~ 15134736 (-) True G105086
TU141756 other upstream 117419 17142146 ~ 17151568 (-) False tmsb1
XR_005640507.1 other upstream 497414 17522141 ~ 17577811 (-) False nexmifb
TU142030 other upstream 758833 17783560 ~ 17795223 (-) False LOC120567448
TU142092 other upstream 962531 17987258 ~ 17991871 (-) False sfxn1
TU142254 other upstream 1278542 18303269 ~ 18305695 (-) False reep2