RNA id: XM_039812996.1


Basic Information

Item Value
RNA id XM_039812996.1
length 2745
RNA type mRNA
GC content 0.49
exon number 12
gene id spock1
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19598361 ~ 19698769 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaggagaaagctGCCGGTCCTCTAGTCCTCGCAGCTCCTCTTTTTGCAGTCTATCCTAGGAGCAGTCAGGTGCCACCGGAGTGCCCGGGGCCGTGGACTTTATTTTTCCCTTGGAATCAGATAAATTGGAAACAAGCGAACTCTATCCCAGAAGATGTTCTTCTTTCTGCTACCTGTCGTGGCTCTCTTGCTGAGCAGAGAAACAGCGGTCTCCGGTATCAATAACGACAAATGGCTGAGCACCGTGGCTCAGTTTAAGGACAGATCCTGGAACAGATTCAGAGATGAAGCGGAGGATGACTACTTCAAAAGCTGGGCTCCTGCCAAGTCTCTGGACCAAGGTCCAGACGCTACAAAGGACCCTTGTCTGAATGTGCGCTGCCCTCCTCACAAGGTGTGCATCAGCCATGACTACCAAACAGCCATCTGCACCAATCACAAGCCGCCAACTCACAGtgtgaAACCCAGGAAAGGCAGCGCAGGTCACAAGCACAGGCTTGAAACTGGTgctcatgggaaatgtaggctcTGCTTGGGGCTCCAGTCAAGTCCTGTGTGTGGATCTGATGGACACACCTACTCCTCCAGGtgtaagtTGGAGTTCCAGAGCTGCCTGTCTGGAAAGACGATCTCAGTAAAATGTGACGGGCTGTGTCCCTGTTTGCCTGGTCATGAGCTCAGCAAACCACCACATAAGACTGAAAAGGCTGcctgcACCGACACAGAGCTCCACAGTCTGGCTGCAAGACTAAAGGAATGGTTCGGAGTTCTCCACCTCGACGCCAACAGAGACCTCAAATCCTCTGACAGCTTAGACTCCACCACTGGACACTTTGACACCAGCATCTTGCCCATCTGTAAGGACTCACTGGGCTGGATGTTCAACAAGCTTGACATGAACTTTGACCTCCTGctggaccaatcagagctgaGTGCCATCTACCTGGACAAGTATGAGCTGTGCATGAAGCCCCTCTTCAACTCCTGTGACTCCTTCAAGGACGGAAAGCTGTCTAACAACGAGTGGTGCTACTGCTTTCAGAAACCTGAGgGACTGCCCTGCCAAGCTGAGAAGAGCAGGATCCAGAACCAGAGTCGAAGGAAGAGCCTCATAGGCTTTTATATTCCCCGTTGTACCGAGGAGGGCTACTTCAAACCAACCCAGTGTCACAGCAGCACCGGCCAGTGTTGGTGTGTGGACAAATATGGCAACGAGATCGCTGGCTCCAGAAAACAAGGCAACCCTAACTGCGATGAGGACCAGGAGACATCAGGGGACTTTGGCAGTGGCGGCGCCGTCATTCTCCTTGACGACCAGGAGGAGGAGCCCTCACAGAACGGGCGGAGCCGGCAGAAGAAGAGACGGGGCCGGATTCACCCCCGAGGAGCCATCGAGGACGATGAGGACGAGGAAGACGATAAGGACGACGAGACTGGCTACGTGTGGTAGCTCCGCTCCATTTAATTCTGCCATCAGCCGACCAGGAAACTCCGTTAACTCAGCACAGATCTGAAGCCATTCCAATGTCTCCTCCTCCACTTACTTTGGAAGCAGTCCATCTTTTGGCTCCTGAACTTGCTCTGTTTTTCCCTGTCCCTTATCCATATCTCTCTCTTCAGTGAACCTCATCCGAACCTCATCCTCTTCATGTGTTTCACTTTTTCCTCAGATGGAAAACACAGAACCTATTAGATTTCAACAACTGTCAAGATCCTGAATTCTGCTCAAGCTGTCCACTTTCTGCCTCTACCTTCCCCCAAACCTGCAATCTTTACCCTCTTCTAACACGGACATGCTTCTCTATTTTCTCTATTACTCCtctatctcccctttctcttatatcctgtccctctctctgctaTCTCTGTATGTCCATGTCAGAGCCTCTGGTTAGTCTGTGAGCCCAGATACATTAGCTGATGTATTGGATGTAAATATGTTTCCTTCAGGAAGGCCAGATTGTGGATTAAACCCTCCCTGTACTTCAGCGGTTGCAATCTCATGTTCTGTGTTCTACCGTCAGGCTCCTTCCAGTGTTCAAAGGTGTTTCCACAACACGTTCCCAGGCTctgagatctctctctctctctctctctctctctctctctctctctctctctctatctctctctctctctctctctctgttatttCATGAAGGATTGTAAATTATTTAACCGTTGATCTTGAATGTCCCAGAAAGCCCAGGAAGCAATGAGATTAATGATGTATTGTCGTCGTTGTTGCATGTTTCTCATCGTGTTTCTGTAAAAGAGAGATTAACCTGGCCAGGTCTAGCTCTATGCATCTCAAACAGAAAGTGATGCCTATTTGGCTGCTACAATACTTTGTTGCTATGTTGATGCTGTCTAGTGTCTTTTTGGTTCTTCTCCCAATCTCAGGAGGTAGGAAGTTGCATTGCAGAGCGATAGCAGTGTAGAAAAGTGAACTGCAAGGCCTACAGTCCAAATCTGTGGCATTTCAGCCAGCTATTCTTGTACTAGTTGATCAGTAGGGCTTCTGAGGCTGTTTGACTGTGCATAGACACTAGAGGAAGAAGCTGCTCCTGAGCTGGGAGGACACATGAAGTCGGGCGAGCAGAGAAGAGGCTCTGTTCTGCCTCCCAACACTGGATATGTTCGTGATTTAAAATTGAAATCCTCACCATGTCAACTAAGTGAATTTTTATTTGTAACTTTGAAAATTTAAGTAAAGTGGCACTTTGGGTGTCTTTTGAACCTTA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142771 lncRNA downstream 40789 19495205 ~ 19557572 (-) True G106303
TU142770 lncRNA downstream 101280 19477168 ~ 19497081 (-) False G106303
TU142712 lncRNA downstream 148237 19399648 ~ 19450124 (-) True G106259
TU142749 lncRNA downstream 161444 19435840 ~ 19436917 (-) False tomm5
TU142731 lncRNA downstream 202367 19394810 ~ 19395994 (-) True G106276
TU142831 lncRNA upstream 158329 19857096 ~ 19857367 (-) True G106349
TU142887 lncRNA upstream 246888 19945655 ~ 20052690 (-) True G106378
TU142872 lncRNA upstream 263187 19961954 ~ 20007579 (-) True G106367
TU142882 lncRNA upstream 341330 20040097 ~ 20055141 (-) True G106375
TU142883 lncRNA upstream 352045 20050812 ~ 20055141 (-) False G106375
XM_039814393.1 mRNA downstream 20515 19569535 ~ 19577846 (-) False dele1
XM_039814392.1 mRNA downstream 20516 19569535 ~ 19577845 (-) False dele1
XM_039814391.1 mRNA downstream 20516 19569535 ~ 19577845 (-) True dele1
XM_039812926.1 mRNA downstream 29264 19530120 ~ 19569097 (-) False LOC120566455
XM_039812927.1 mRNA downstream 29264 19530120 ~ 19569097 (-) False LOC120566455
XM_039813054.1 mRNA upstream 24735 19723502 ~ 19727291 (-) True LOC120566528
XM_039812992.1 mRNA upstream 43119 19741886 ~ 19751707 (-) True LOC120566486
XM_039814417.1 mRNA upstream 273066 19971833 ~ 19981633 (-) True fgf18a
XM_039814418.1 mRNA upstream 273066 19971833 ~ 19981628 (-) False fgf18a
XM_039813132.1 mRNA upstream 887215 20585982 ~ 20699203 (-) False LOC120566601
TU142773 other downstream 115803 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 379217 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 906951 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1292666 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1606490 17987258 ~ 17991871 (-) False sfxn1
TU142874 other upstream 273648 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 532141 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1429071 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2091486 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 2420918 22119685 ~ 22120067 (-) True G107015

Expression Profile