RNA id: XM_039813034.1


Basic Information

Item Value
RNA id XM_039813034.1
length 2273
RNA type mRNA
GC content 0.48
exon number 13
gene id clk4a
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18539401 ~ 18548715 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATCGGATTCTAGATGCGACCAGGGAAGCTCGCCATCTTTGAAGACGACTAGTCGGAGGCATTTTGCAGTATCTTTGTTCATAATTTTTTCATAATTAAACTGATACACCTCCCATTTGAATCCCATAATTGTAAAAGACAGATGCGCCACTCAGAGCGAATGCGCTCCCCAGGTGTCTGGCTCGATGAGTACAGCTGGGAAGAGAGAATGGAGTGTCGTAAACGAAAGAAACAAGATTCGCACAGCAGCGAAAGAGAAAATAAGTCCAGAAGAACTCACCATCAACACCAGGCCTATGAGGGGCACTTCTTGGAAACCCGCAGTTTGAACCAGAGGCTGGACTCtcgggatcgaaccaccaaggACCACCGTTTGGGCATGGCCTGTGAGGACAGCCGTGAAGGCACCTGCAAGGACAGAGACCGTGACTGGCACCACTACAGCAAGTCATCCGGGCGCAGTGGTCGGAGTGGTCGCAGCAGGCGAAGCAGCCGCAGGCACAGAGACAGAAGGCGCAGACGTAGCCACTCTCGCCACAGGTCCTCCTCGAGGAGGACCCAACAGCGCAGGAGCAGGAAAAGATCCAGGAGTGTTGAGGATGATGAAGAGGGTCACCTCATCTATCACAGTGGAGACATGCTGAGAGCGAGATATGAGATTGTGTGTACTCTAGGAGAGGGTGCCTTTGGGAAGGTCGTCGAATGCATTGATCACTCAAATGATGGAGCTCGAGTGGCTCTGAAGATCATTAAAAACATAGGCCGCTACCGTGAGGCAGCTATGTCTGAGGTAGAGGTGCTTGAACAGTTGAAGTCCCTCGACTCTGATAAGCGATATGCTTGTGTACACATACTGGACTGGTTTGACTACCACGGCCACATTTGTATTGCCTTTGAACTGCTTGGCCTCAGCACCTATGATTTCCTCAAGGAAAACAATTTCCAGCCTTTCCCCATAGAACACATCAGGCACATGGCGTACCAGATCATCCGGGCTGTGAGATTTCTGCATAACAACAAGCTGACTCACACGGATCTGAAGCCTGAGAATATTCTCTTCATTAGTTCAGACTATGAGATGGAGTACAACCCTGAAATGAAACGGGATGAACGGACATTGAAGAACCCAGATGTGAAAATTGTGGACTTCGGTAACGCCACGTATGAACATGAGCATCACACCTCCGTGGTGTCGACACGTCACTACCGTGCTCCTGAAGTCATTTTAGATCTGGGCTGGGACCATTCCTGTGATGTCTGGAGTGTAGGCTGCATACTCATTGAGTACTACCTTGGATCTACTCTCTTCCAGACTCATGACAGTAAAGAGCACCTTGCAATGATGGAGAGAGTCCTGGGCCCCATCCCCACAAACCTCCTGCAGAAAACCAAGAAACGGCGGTATGTTCACCGTTGCAAGCTTGACTGGGATGTGCACAGCTCTTCTGGGAGATATGTCAAGAAACACTGCAAACCCTTAAAGAATTACATGCTGTCTAAGGGCGAAGACCACCACCAGCTGTTTGACCTGATAGAGAAGATGATGGAGTATGACCCAGCAAAGCGCCTCAGTCTGGAGCAGGCCCTCCAACATCCCTTCTTCTCCTGCTTCCgcaagagcagcagcagcagcagcagtaaaagccaaagcagcagaggcagcagcagcagaagcagcagcagtagcagcaaaAGAGACTGAACTCCTGAACCTGTAACCTTGGCCAGGGCCTGACTGTCACCATGACATTTCTCATGGTGCGCAGTGGCAGCCTCTACTTCCTGACTCTCCAGGAGAGGTGTACCTTAACTGACTGTATCAGTCCACTGCCCTACCTTGCTGTGTCCTGTCCTAAGCCAGTGTGTTTCTTAGTCTCACTCATCAACAAGTTGTGTTCTCATCTCTGGCATGTTTTGATGTAATGAATCCCCCAGTTGATTTCTATTTATTTGCcattgtaatttaatttgtcACTCCTAAGCATATACTGGTAGAgctggtttttttttattcatgagtATTCAGAATGTGTCCCATGTTCTTTCTCTGCATTATGAAGTGGGTGATGGGTAATGTTACAAATTGAGAATTGCTTTACCATCCCATCAGTGTCACCAGTAATTTATTCAGCACTGTAGATGAATAAAAAAGCTATTGTGGGCAGAACATTTCTTGTATATAGAATTTAAgtaatttcttttttcactGACTGGTTATGCAACTTTTGCAGTATCATGTAAATTCTCAATAAACGTGAATAGACTATAGAA

Function

GO: NA

KEGG:

id description
K23561 CLK1_4; dual specificity protein kinase CLK1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142250 lncRNA downstream 225000 18285958 ~ 18314401 (-) False reep2
TU142139 lncRNA downstream 470945 18067449 ~ 18068456 (-) False LOC120566360
TU142128 lncRNA downstream 503644 18035382 ~ 18035757 (-) True G105835
TU142127 lncRNA downstream 504153 18033407 ~ 18035248 (-) True G105834
TU142119 lncRNA downstream 515505 18022437 ~ 18023896 (-) True G105827
TU142304 lncRNA upstream 1395 18550110 ~ 18551684 (-) True G105967
TU142426 lncRNA upstream 161327 18710042 ~ 18729032 (-) True G106057
TU142435 lncRNA upstream 449825 18998540 ~ 18999875 (-) True G106066
TU142437 lncRNA upstream 453057 19001772 ~ 19002114 (-) True G106068
TU142448 lncRNA upstream 469037 19017752 ~ 19018811 (-) False rgs14b
XM_039814196.1 mRNA downstream 948 18415035 ~ 18538453 (-) False col23a1a
XM_039814194.1 mRNA downstream 949 18415035 ~ 18538452 (-) False col23a1a
XM_039814193.1 mRNA downstream 949 18415035 ~ 18538452 (-) False col23a1a
XM_039814200.1 mRNA downstream 949 18417659 ~ 18538452 (-) False col23a1a
XM_039814199.1 mRNA downstream 950 18415035 ~ 18538451 (-) False col23a1a
XM_039813037.1 mRNA upstream 4954 18553669 ~ 18606715 (-) False LOC120566508
XM_039813036.1 mRNA upstream 4954 18553669 ~ 18574151 (-) True LOC120566508
XM_039813238.1 mRNA upstream 71418 18620133 ~ 18631930 (-) True mapk9
XM_039813239.1 mRNA upstream 73408 18622123 ~ 18640808 (-) False mapk9
XM_039813051.1 mRNA upstream 93777 18642492 ~ 18658559 (-) True gfpt2
TU142254 other downstream 233706 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 547530 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 744178 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 961590 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 1387833 17142146 ~ 17151568 (-) False tmsb1
TU142417 other upstream 139073 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 667274 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 931303 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 1423700 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1682193 20230908 ~ 20233924 (-) True G106443

Expression Profile