RNA id: XM_039813055.1


Basic Information

Item Value
RNA id XM_039813055.1
length 2580
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC120566529
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20064986 ~ 20067565 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCCAAAGAGACGGGTTGAAAGACCGAACTAAACAgccttcattcagaatggtggTTCCCGCAGACCATTACTGTTTATTATCCGTGAGagaatactaaaaaaaaaaacaattttgttGACAGATTTAAGACTATTTTTTTCTCCAGAAATGGCGATAACGGACATCAAAGGAGAATGGCTGGGTGTGTGGATTTATTTCTGTCTGTCCCTGCTGATTGTGACTAATTTGAAAGGAATCTCTGCACAGATACGATATTCAATTCAGGAAGAAGTCAAATTAGGAACGGCAGTTGGAAATGTGGCCAAAGACCTTGGATTAGATGTGGGACGACTGACGGATAGGAATCTTCGTGTCATTGCAGGAACAAAGCAGGATTTGTTTAAGGTAAATCCGAGAGATGGAGTTTTGTTAGTCAGCGAGAGAATAGACAGGGAGGAGCTGTGTGTAAAAACGGCTCCATGCATCACAAATCTGAAAGCAGTTGTAGAAAATCCTCTCGAGATGCACCAAATAATAGTTGAAATACTCGATATAAACGACAATTCTCCGAGATTCCCAGAAGAAAATTACACATTAGAGGTGCTAGAGTCCGCCATAGTTGGTTCTCGATTTCAAATGGAAGGAGCACACGACTTGGATGCTGGTTTGAATTCCTTACAATCATATAAGCTCAACcataaccagtattttcgcctgGAAACCGAAGAATTTGGGGAGGATGGAAAGGTTCCATTTCTCATTTTACAGCGACCTTTGGATAGAGAACACGTCGATCAACACTGGTTACTCTTAACAGCTAATGATGGAGGTAAACCTTCAAAATCTGGTACTATTAATATCACTGTCATTGTGTCTGATATAAATGATAACTCGCCTAAGTGTGATAAACAGAAATACACCATAACAATAAAGGAAAACGCACCTGCAGGGACATTTCTGCTGACAGTAAATGCATCTGACTCAGATGAGGGAATGAACAGTTTGATTGAATATTCTTTACGGAGTAAACTTAGAAAACTCTCATCTGAACCGTTTGATTTAAATAGCAGCACTGGTACACTTACATTGAAAGAGGGCCTTGATTACGAGGAAAAGCAAGTCTATGAAATTAAGGTACTGGCTGCGGACAAAGGTGCTgtgtctctctccacacactgCAACGTGGTTGTTAGAGTGGAAGACGTGAACGATAATAAACCCGAAATAGACATCACATCCCTTTCAAGTCGCATTTCAGAGGATGCACCTCCTGGCACGGTGGTGGCGTTGATGGATGTGACGGACCTTGACTCAGGTGTGAACGGACAGGTGGTCTGCAGTGTGCCCGGCCATTTACCTTTTGACTTAAATCCATCCCCGGACGGACAGTCATACTCTTTGGTCACGAAGGACTACCTAGATAAGGAAACCAtgcatatatataatattacaatAATGGCTAAGGATTTAGGGAGCCCCGCTATGTCATCTACGAAGGTAATACAGGTAGATGTGCTAGATGTTAATGACAATCGTCCTTTGTTCACTGAAAGCCCATATACTTTTTATGTGCCTGAAAACAACAAGGCTGGAATTTCAATTTTTTCAGTGAGCGCGGGAGATGCTGATGAAGGCGAAAATGCGGCAGTCACATATTCACTCAACCGGAAGATTCCAGGGCCCACTGTAACTTCTTTTTTGAATATAAATGAAGCCGATGGCACCATTTCCGCACTAAAAGGTTTTGACTTTGAAACACTGAAAACTTTCCAGTTCCAAGTTGTTGCCACAGATTCTGGAACTCCGTCACTAAGCAGCAACGTCACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGCTCCAGTCATCCTGTATCCAGTCAGCTCTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACACTTGGTGACTAAAGTCAGAGCCTATGACGCTGATATAGGATATAACGGCTGGTTActgttttcactgcaggacgTTACTGACCACAGTCTCTTTGGTTTGGACCGCTATACAGGACAGATCAGAACACTTCGCTCATTCACAGAGACAGACGAGGCGGAGCATAAACTGGTCATACTGGTGAAAGACAATGGGAACGTTTCACTCTCAGCAACAGCTACTGTGCTTGTCAAAGTTGTGGAGCCCAAAGAGGCTTTTGCTGCTTCTGATGTTAAAAGTGCAACaaaggatgaggaggagaataATGTGACTTTTTACCTGATGATAACTTTGGGCTCagtttcaacactttttctcaTCAGTATCATCGTGCTGATTGCAATGCAGTGCTCCAAAACCACAGActatacttctaaatatctacaagAGACTAATTATGATGGGACACTGTGTCACAGCATCCAGTACAGATCTGGAGACAAACGGTACATGCTAGTAGGACCCAGAATGAGTATAGGATCTACTATAGTCCCGGGCAGCCATGCGAATACACTAGTGCTGCCTGACAGGAGAGGGGCATCTGGAGAGGTAAGACATGAAAAACGTTTTACACAGTATGTTTACAAGCATATAATTCTGTGTTTTTGCTTTGCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640570.1 lncRNA upstream 66185 19973785 ~ 19998801 (+) True LOC120567444
XR_005640569.1 lncRNA upstream 66185 19973785 ~ 19998801 (+) False LOC120567444
XR_005640458.1 lncRNA upstream 110023 19950757 ~ 19954963 (+) True LOC120566743
TU142833 lncRNA upstream 123271 19940938 ~ 19941715 (+) True G106351
XR_005640411.1 lncRNA upstream 216708 19844839 ~ 19848278 (+) True LOC120566488
XR_005640536.1 lncRNA downstream 206268 20273833 ~ 20275911 (+) True LOC120567249
TU143143 lncRNA downstream 642944 20710509 ~ 20731673 (+) True G106577
TU143189 lncRNA downstream 879265 20946830 ~ 20947415 (+) False hrh2a
TU143269 lncRNA downstream 1032919 21100484 ~ 21100835 (+) True G106679
TU143274 lncRNA downstream 1039933 21107498 ~ 21108359 (+) True G106684
XM_039812685.1 mRNA upstream 3648 20028863 ~ 20061338 (+) True LOC120566323
XM_039812683.1 mRNA upstream 24606 20037140 ~ 20040380 (+) True LOC120566322
XM_039812684.1 mRNA upstream 24931 20034393 ~ 20040055 (+) False LOC120566322
XM_039814288.1 mRNA upstream 42723 20015211 ~ 20022263 (+) True si:ch73-233f7.1
XM_039814290.1 mRNA upstream 44083 20015208 ~ 20020903 (+) False si:ch73-233f7.1
XM_039814144.1 mRNA downstream 898 20068463 ~ 20071057 (+) True LOC120567232
XM_039813056.1 mRNA downstream 4790 20072355 ~ 20074975 (+) True LOC120566530
XM_039813057.1 mRNA downstream 8188 20075753 ~ 20078369 (+) True LOC120566532
XM_039813058.1 mRNA downstream 14808 20082373 ~ 20085207 (+) True LOC120566533
XM_039814142.1 mRNA downstream 21975 20089540 ~ 20145603 (+) True LOC120567230
XR_005640374.1 other upstream 3648 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 459213 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 2171456 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 2379287 17682919 ~ 17685699 (+) True G105677
TU141805 other upstream 2704725 17357929 ~ 17360261 (+) False LOC120566324
TU143018 other downstream 284156 20351721 ~ 20352167 (+) True G106465
XR_005640584.1 other downstream 1381239 21448804 ~ 21461450 (+) False stx3a
TU143990 other downstream 2794625 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 2887407 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 3190706 23258271 ~ 23262229 (+) False tgfb5

Expression Profile